PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011367.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 556aa MW: 62493.3 Da PI: 7.5823

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011367.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.8	3.3e-07	85	106	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C f++ G+C+ Gd+C+F H+ PCP011367.1 85 VPCYFYSN-GFCNKGDKCSFLHD 106 699999.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MEEELVKRNT DCVYFLASPL TCKKGIDCEF RHSKIARLNP KECWYWLAGN CLNPTCAFRH 60 PPLDGHGGTP SESSPPSVTS NKTSVPCYFY SNGFCNKGDK CSFLHDTDGN ASNGKSSKTA 120 SACNEALALT SENEAAAGNG ALARISESKA PAGNEALALN SETKASVGND TMSAPRITHL 180 NPSETASKAT VGTRFQHKEN LSYFEQRVQR DVTQKSVYTQ ISMSGGEEAG EIRLDSPPED 240 SSIRTNSHSW TDQSSEDEDD DLVLEERWES SPGFDVLVDG KSDNLGCDDD QEYFPTLHGE 300 HRELNSHFLG HDFENPDEYV PEYPDAKLLH DRDMYNDCLD TRIIFGNHGP NPVYTKERMS 360 DLMFSSKRKH MPRELFDGDE DFLDLRDRLR RRRVTDGRSI NGLSRRHESL GLFGRPQRHG 420 LGRRLHRRLA SIMGNNTYES LRGNGAFSKG GIQRGSLRHA QEYRSRKHHK ERRPAKQQFP 480 WSEISKKPFP REKRCAGQPT SFTGPKSLAQ IREEKRKAEE NGGSIGIPKR ARRTTVDFQG 540 PKPLNEILKE KGKIPD

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MEEELVKRNT DCVYFLASPL TCKKGIDCEF RHSKIARLNP KECWYWLAGN CLNPTCAFRH  60
PPLDGHGGTP SESSPPSVTS NKTSVPCYFY SNGFCNKGDK CSFLHDTDGN ASNGKSSKTA  120
SACNEALALT SENEAAAGNG ALARISESKA PAGNEALALN SETKASVGND TMSAPRITHL  180
NPSETASKAT VGTRFQHKEN LSYFEQRVQR DVTQKSVYTQ ISMSGGEEAG EIRLDSPPED  240
SSIRTNSHSW TDQSSEDEDD DLVLEERWES SPGFDVLVDG KSDNLGCDDD QEYFPTLHGE  300
HRELNSHFLG HDFENPDEYV PEYPDAKLLH DRDMYNDCLD TRIIFGNHGP NPVYTKERMS  360
DLMFSSKRKH MPRELFDGDE DFLDLRDRLR RRRVTDGRSI NGLSRRHESL GLFGRPQRHG  420
LGRRLHRRLA SIMGNNTYES LRGNGAFSKG GIQRGSLRHA QEYRSRKHHK ERRPAKQQFP  480
WSEISKKPFP REKRCAGQPT SFTGPKSLAQ IREEKRKAEE NGGSIGIPKR ARRTTVDFQG  540
PKPLNEILKE KGKIPD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	387	393	DRLRRRR