PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP011280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | GRAS | ||||||||
Protein Properties | Length: 163aa MW: 18254.9 Da PI: 8.2021 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 170.2 | 1.6e-52 | 2 | 163 | 214 | 374 |
GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311 +desvs++++rde+L+ vk+l P+vv++veqe+++n+++F++r+ e++ yy al++s+ea++pre+ er+kvE++ l+r++vn vaceg++r+er+e PCP011280.1 2 PDESVSMDNPRDELLRRVKGLAPRVVTLVEQELNTNTAPFMARVNECCAYYGALLESIEATVPRENPERVKVEEA-LSRKVVNSVACEGRDRVERCEV 98 799************************************************************************.********************** PP GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++kWr+r+++aGF+ p++ +++++ k l + + ++v+ee+g +++gW +r+L+++SaWr PCP011280.1 99 FGKWRARMGMAGFELRPMGPNMTESLKNRLGSGNrvNSAFTVKEENGGVCFGWISRTLTVASAWR 163 ***************************999877765566*************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence |
MPDESVSMDN PRDELLRRVK GLAPRVVTLV EQELNTNTAP FMARVNECCA YYGALLESIE 60 ATVPRENPER VKVEEALSRK VVNSVACEGR DRVERCEVFG KWRARMGMAG FELRPMGPNM 120 TESLKNRLGS GNRVNSAFTV KEENGGVCFG WISRTLTVAS AWR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 4e-80 | GRAS family protein |