PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP010912.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 736aa    MW: 80738.4 Da    PI: 6.0524
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP010912.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-1965120156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  r++ +++t+ q++e+e++F+ +++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  PCP010912.1  65 RKRYHRHTQRQIQEMEAFFKDCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 120
                  789999***********************************************998 PP
2START214.24.6e-672534751206
                  HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                  ela +a++el+++a+ ++p+Wv         e++n+d +l++f+++ +      ++ea+r+s +v+m++++lve+l+d++ qW++ +     +a+tl+
  PCP010912.1 253 ELAVAAMEELIRMAQDGDPLWVPGDhnsiqkEILNEDAYLRTFPRGIGpkilgLKSEASRESELVIMNHVNLVEILMDVN-QWSTIFCgivsRAMTLD 349
                  57899*****************877788999**************999********************************.******99999****** PP

                  EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
        START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                   +s+g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ p    + R++++pSg+li++++ng+skvtwvehv++++
  PCP010912.1 350 ILSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQQVDGTWAVVDVSLDNLRPSP----ISRSRRRPSGCLIQELPNGYSKVTWVEHVEVDD 443
                  ***********************************************************99....69******************************* PP

                  SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 175 rlphwllrslvksglaegaktwvatlqrqcek 206
                  r +h+++r+lv+sgla+gak+wvatl+rqce+
  PCP010912.1 444 RAVHNIYRPLVNSGLAFGAKRWVATLDRQCER 475
                  ******************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    
MFQPSMFDNH HILDHMTTSS THKTSDSTGR LLEDDFETKS GTETTMDIPS GDEQDPNTTG  60
PRPKRKRYHR HTQRQIQEME AFFKDCPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK  120
AQHERHDNSI LKSENDKLHA ENNRYKEALG NATCPNCGGP AAIGEMSFDE QHLRIENARL  180
REEIDRISSI AAKYVGKPLT SSFSSHVPSR SLDVAVGNFG TQPGFVGEMY GSSSDLLRTV  240
SVPTEADKPM IVELAVAAME ELIRMAQDGD PLWVPGDHNS IQKEILNEDA YLRTFPRGIG  300
PKILGLKSEA SRESELVIMN HVNLVEILMD VNQWSTIFCG IVSRAMTLDI LSTGVAGNYN  360
GALQVMTAEF QVPSPLVPTR ENYFVRYCKQ QVDGTWAVVD VSLDNLRPSP ISRSRRRPSG  420
CLIQELPNGY SKVTWVEHVE VDDRAVHNIY RPLVNSGLAF GAKRWVATLD RQCERLASSM  480
ASNIPAGDLC VITSTEGRKS MLKLAQRMVM SFCTGVGAST AHAWTTLSAT GSDDVRVMTR  540
KSMDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRS EWDILSNGGL VQEMAHIANG  600
RDPGNCVSLL RVNSANSSQS NMLILQESCT DSTGSYVIYA PVDIVAMNVV LSGGDPDYVA  660
LLPSGFAILP DGAAGSAGGG ILDVGSGGSL LTVAFQILVD SVPTAKLSLG SVATVNNLIK  720
CTVERIRAAV TCDQNP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein