PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP010642.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 368aa MW: 41741.4 Da PI: 7.4409

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP010642.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.2	1.6e-53	11	141	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL++ ++ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ PCP010642.1 11 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKEkcRIGSgPQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHLP 107 69**************************.9***********952444443456*********************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +g++ktLvfy+grap+g+ktdW+mheyrle PCP010642.1 108 NSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLE 141 ******************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MMAAGNGQLT VPPGFRFHPT DEELLYYYLR KKVSYEAIDL DVIREVDLNK LEPWDLKEKC 60 RIGSGPQNDW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAIHLPNSK RIGMRKTLVF 120 YTGRAPHGQK TDWIMHEYRL EDDNTNADQV QEDGWVVCRV FKKNHNRGYL PEFAHQDHRE 180 HDHFTNMKAS GSHVPILLDH YDHHQQKQNH HHLEGLYNYP SSFDHAGSMH LPQLFSPESA 240 VAASSFVSPH NINLNTMDIE CSQNLLRLTS TAAAAAAAAS GSCGLMQQQE RSFISGGDWS 300 FLDKLLASHQ NLDVNHSASQ TAKCNPSSST QQLSNSHDHD HVGTSSSTQQ RFPFQYLGCA 360 TDILKFSK

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MMAAGNGQLT VPPGFRFHPT DEELLYYYLR KKVSYEAIDL DVIREVDLNK LEPWDLKEKC  60
RIGSGPQNDW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAIHLPNSK RIGMRKTLVF  120
YTGRAPHGQK TDWIMHEYRL EDDNTNADQV QEDGWVVCRV FKKNHNRGYL PEFAHQDHRE  180
HDHFTNMKAS GSHVPILLDH YDHHQQKQNH HHLEGLYNYP SSFDHAGSMH LPQLFSPESA  240
VAASSFVSPH NINLNTMDIE CSQNLLRLTS TAAAAAAAAS GSCGLMQQQE RSFISGGDWS  300
FLDKLLASHQ NLDVNHSASQ TAKCNPSSST QQLSNSHDHD HVGTSSSTQQ RFPFQYLGCA  360
TDILKFSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.1	1e-118	NAC family protein