PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP010597.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 446aa    MW: 49705 Da    PI: 7.5116
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP010597.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-08146166526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C +++r G C++Gd+C F+Hg
  PCP010597.1 146 VCADYRR-GSCSRGDSCEFSHG 166
                  799****.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    
MSSVCAEQHK FHPSHQLLSF KKTLLRDTNI DIPPRKLLTS RRPQEFPSSD MYAAADCGSP  60
RFSSVDEALL RKFLPYNTGS DGSDRSDDSD DDEVDPYSSD HFRMFEFKVR RCSRSRSHDW  120
TDCPFAHPGE KARRRDPRRH NYSGTVCADY RRGSCSRGDS CEFSHGVFEC WLHPARYRTE  180
ACKDGKNCKR KVCFFAHTPR QLRVLPADQV LSPMAGSKKK YHLNNSSVGS PRSCSNNNKQ  240
YCCLFCHSAA ATSSPTSTLL GGMSHHLSPP VSPAAKHCSS VDEFHNSPVM SPCGGLGLGG  300
LDQVHASTCG LMSYNEVVAE LMSSLEAMKF HEAATASAAA SQKRWVDISF DMNMNYAAAD  360
DDLQRQQQQF ILSPGPLRAQ ADHLEAEEDA ESILLTGMKI AHQEMEAYWV LIVIPIFPLT  420
IRRSLTEEGL PQPVTRTRIL AGLMTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.17e-68C3H family protein