PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP010194.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family NF-YA
Protein Properties Length: 357aa    MW: 39714.4 Da    PI: 9.7995
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP010194.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA84.22e-26186254158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk...........ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  dep+YVNaKQy++Il+RRq R kle+++k           +  k  +pylheSRh hAl+R+Rg+gGrF
  PCP010194.1 186 DEPIYVNAKQYRAILRRRQFRSKLEAQNKlvkvrkvllrkTFLKYVQPYLHESRHVHALKRARGTGGRF 254
                  79***********************************99944799***********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
MQNLDRKNSG FGSAHLTFPF VVGSSSWENS TETHVQHSSS SNSLILNMGV PLHNYHNSKQ  60
SRINFQDQDS SSTLSTGQSL SEVDSMKEGN PFGQGIVSAQ SGYNETQGKP VGAHMKSLSP  120
MENQSFIFPS QIDFNRSIGH IPFHYAEPYF GSLLATACGP QATIHHPQVV GITPGRVPLP  180
LDLTEDEPIY VNAKQYRAIL RRRQFRSKLE AQNKLVKVRK VLLRKTFLKY VQPYLHESRH  240
VHALKRARGT GGRFLNVKKV QDSKPNTTHL RVNASGTAQL HLIGNMSESE VHEPDNYRDG  300
ASTTSCYEVT STSNSDDVFP RQDLRLSSYP SHIGGTMQVP FVDVRGGGNQ HHHSILR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-64NF-YA family protein