PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP009971.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 693aa    MW: 77304.6 Da    PI: 6.7512
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP009971.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.3e-23127227198
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f+k+lt sd++++g +++ +k+a+e+     +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++el+
  PCP009971.1 127 FCKILTASDTSTHGGFSVLRKHATEClppldMNQATPTQELIAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNGELR 222
                  99****************************9555556679************************************************..3489999* PP

                  EEEE- CS
           B3  94 vkvfr 98 
                  v+v+r
  PCP009971.1 223 VGVRR 227
                  ***98 PP
2Auxin_resp91.81.1e-30253332183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+ tk+ F v+ +Pr+  s+F++ ++k+++a+++k+s+GmRf+m+fe+++s+err++Gt+v v dl+p +W++SkWrsLk
  PCP009971.1 253 ASHALMTKTLFVVYSKPRT--SQFIIGLSKYLEAINNKFSLGMRFRMRFEGDESPERRFTGTIVEVGDLSP-QWTESKWRSLK 332
                  6899**************6..9*************************************************.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    
MAQLECDSSI SRAETDLRGD DLYTELWKLC AGPLVDVPRP GEKVYYFPQG HMEQLESSTN  60
QELNQQIPLF NLPSKILCSV VHIRLLAEQE TDEVYAQITL HPEADQCEPT SPDPCKPEAP  120
KATVHWFCKI LTASDTSTHG GFSVLRKHAT ECLPPLDMNQ ATPTQELIAK DLHGYEWKFK  180
HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGDNGE LRVGVRRLAR QPSQMPSSVI  240
SSQSMHLGVL ATASHALMTK TLFVVYSKPR TSQFIIGLSK YLEAINNKFS LGMRFRMRFE  300
GDESPERRFT GTIVEVGDLS PQWTESKWRS LKVQWDEHAA VQRPDRVSPW DIEPFVASAP  360
SNLAQPVVKS KRPRPVEISS SEVTTNSAAS AFWYHSSPQT AELNRAGVLE VQTSGSQVVW  420
PLRQKESNIS SYSSARVCSE GIWPSSPHVD VSLSLFPDSK ESCKNVITGS VLSSFASPIS  480
SKPNNVPIHA QVEKGKKSDS SGFWLFGCNL SNNTKTTCPE EIEPVFKTMP SGAKGPIPAD  540
AFESDQGLDV SKLSKEQKQV ILEASPKETQ GKQGSTLSTR TRTKVQMQGV AVGRAVDLTA  600
LKGYDHLIDE LEKMFEIKGE LRPKNKWAVV FTDDENDMML MGDDQWPDFC KLVKKIFIYS  660
SDEVQKMNRC KLQSSSLDCE GTVSVDSEHR LET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371375KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0ARF family protein