PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009830.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HB-other

Protein Properties

Length: 2190aa MW: 245054 Da PI: 5.626

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009830.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3e-18	436	491	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps++ r+eL++klgL++rq ++WF+ rR k+kk PCP009830.1 436 PKRQMKTPFQLETLEKAYALETYPSEAIRAELSEKLGLSDRQLQMWFCHRRLKDKK 491 69****************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 2190 aa Download sequence
MQSRVFSRAT AFAPLPYQRK PSHRENGAVS FVSARPIGAV SEGGNLIWGR QLRPALLLEA 60 SPMKREILRP CQTAASSPAE GDSAGDGKVA PIGFFNKYPF ILTGFFFFMW YFLNVIFNIM 120 NKKIYNYFPY PYFVSVVHLA VGVVYCLISW AVGLPKRAPI DANLLKLLIP VAVCHALGHV 180 TSNVSFAAVA VSFTHTIKAL EPFFNAAASQ FVLGQSIPLS LWLSLAPVVI GVSMASLTEL 240 SFNWLGFISA MISNISFTYR SIYSKKAMTD MDSTNLYAYI SIIALFVCIP PALIVEGPQL 300 IKYGFNDAIA KVGLVKFVTD LFWVGLFYHL YNQLATNTLE RVAPLTHAVG NVLKRVFVIG 360 FSIVIFGNKI STQTGIGTVI AIAGVAIYSY LKAKIEEEKR ISVSISMEAA SEGENQNKNH 420 ESNSKLNNSS EGQSKPKRQM KTPFQLETLE KAYALETYPS EAIRAELSEK LGLSDRQLQM 480 WFCHRRLKDK KEGGPPKKQR KLVPTLPEPP IDDLAHGSEP GSDYGSGSGS GSSPFGHPEL 540 RNVVARGVAD DIPMRGRRYY ESPQSILELR AIACVEAQLG EPLREDGPLL GIEFDPLPPD 600 AFGAPLEYIR IWFHANPFDS LLGEAVAEQH KRSAHALEGK YERHDAKPIK NEFSSQATTR 660 ALHEYPFLQD HSSIRSDAYG QVSQSHFHDS AIDGPTARTS SFAVGNEPLS RVHGVHGHAS 720 RVRLLSQQER QVVPYSSPVD DGSVAQRDSF TNVRVNTQFS DPPVVAPALE NSNVLSEGQI 780 NDSILRMERK RKSEEARIAK EVEAHELRIR KELEKQDILR RKNEERMRKE MEKQDRERRK 840 EEERLMRERQ REEERLKREQ KREIERREKF LQKEYIRAEK MRQKEELRKE REVVKRKAAL 900 EKATARRLAK ESMELIEDEQ LELMELAATS KGLSSIICID LDTLQNLDAF RDSLVAFPPR 960 SVQLKGPFAI QPWINSEANI GNLLMVWRFL ITFADVLELW PFTLDEFVQA FHDYDSRLLG 1020 EIHVALLRLV IKDIEDVART PTGLGINQNG AANPGGGHPQ IVEGAYAWGF DIRNWQQHLN 1080 LLTWPEIFRQ LALSAGFGPQ LKKRSIAWSY TPDNHEGKGC QDAISNLRNG SAAVNAFAVM 1140 QEKGLLAPRR SRHRLTPGTV KFAAFHVLSL EGNKGLTVLD LADKIQKSGL RDLTTSKTPE 1200 ASISVALTRD TKLFERIAPS TYRVRAAYRK DPVDAEAILS AARKKIQIFE NGILAAEDVD 1260 DVERDDVEND EVERDEESEC EVDEDPEVDD LATPSVANKS PDDYNEVISF SENGKGSLSN 1320 DVGLAVKNEF DKDVLCSPVT GSKDAFCPSA SLKQCVLGAD ISTSHLDQEN MEIDESKSGE 1380 SWVQGLTEGE YSDLSVEERL SGLVALIGVA NEGNTIRIVL EDRLEAANAL KKQMWAEAQL 1440 DKSRLKEENV GRLDIPSLMG GKAEVQATGV EDGLSPLRDV DNRNIDASPV TAENEKSIHG 1500 SQGVQNQLNG VHVERTSAAQ DISMGSDNFL TQQLAYASKR SRSQLKSYIA HRAEEMYAYR 1560 SLPLGQDRRH NRYWQFVASA SRHDPGSGRI FIELNNGSWR LIDTEEAFDA LVTSLDTRGI 1620 RESHLRLMLQ KIEASFKENV QKNTHRPNNA GPTKNHVKNE ADEMDSSPDF PSHFDSPESA 1680 VCALNSDAAQ TSSSFRIELD SSETEKRAAL RRYQDFQKWM WKECSNSSTL CATKYGKERC 1740 RPLFDVCDVC LNCYYFEDFH CDTCHQTFDA FNRNFDFGEH VMQCKEKRML EPWNFDIPCT 1800 SLPLARRLLK TLIALVEVSI PPEALHLSWT DDHRKMWGEK LNASSSMDEL LQILTLVETA 1860 VKKDFLSSHF AMTEELLGSC KQSGVVRDYL DSGSVPVLPW IPHTTAAVAL RLHEIDSSIT 1920 YVKQAKAEPT ADKEVGEYLN QPMRLPTSRS ETELTEAGLN EYMREENSTH LKSGRNSFRR 1980 GRGGREQGRG KRWQKKVSNP KSGASRQNIR GNENLNQGLR TVGKRTQGQG SGRGRRTVRK 2040 RRMKNRAVEG TPLAHVSDMR SSPESGGESP RNLAEEWDDE KIDMRGDEQG GGFERVDTLE 2100 SEDDDQAVGY EQGSWEIGFD GTSSGWNGGL VEASDDDIDA SEDDNNVMEE VRDEDSEGDV 2160 DMSDASDEIL PNTMRNDDGT ESESSDDSSE

Sequence ? help Back to Top

Protein Sequence Length: 2190 aa Download sequence

MQSRVFSRAT AFAPLPYQRK PSHRENGAVS FVSARPIGAV SEGGNLIWGR QLRPALLLEA  60
SPMKREILRP CQTAASSPAE GDSAGDGKVA PIGFFNKYPF ILTGFFFFMW YFLNVIFNIM  120
NKKIYNYFPY PYFVSVVHLA VGVVYCLISW AVGLPKRAPI DANLLKLLIP VAVCHALGHV  180
TSNVSFAAVA VSFTHTIKAL EPFFNAAASQ FVLGQSIPLS LWLSLAPVVI GVSMASLTEL  240
SFNWLGFISA MISNISFTYR SIYSKKAMTD MDSTNLYAYI SIIALFVCIP PALIVEGPQL  300
IKYGFNDAIA KVGLVKFVTD LFWVGLFYHL YNQLATNTLE RVAPLTHAVG NVLKRVFVIG  360
FSIVIFGNKI STQTGIGTVI AIAGVAIYSY LKAKIEEEKR ISVSISMEAA SEGENQNKNH  420
ESNSKLNNSS EGQSKPKRQM KTPFQLETLE KAYALETYPS EAIRAELSEK LGLSDRQLQM  480
WFCHRRLKDK KEGGPPKKQR KLVPTLPEPP IDDLAHGSEP GSDYGSGSGS GSSPFGHPEL  540
RNVVARGVAD DIPMRGRRYY ESPQSILELR AIACVEAQLG EPLREDGPLL GIEFDPLPPD  600
AFGAPLEYIR IWFHANPFDS LLGEAVAEQH KRSAHALEGK YERHDAKPIK NEFSSQATTR  660
ALHEYPFLQD HSSIRSDAYG QVSQSHFHDS AIDGPTARTS SFAVGNEPLS RVHGVHGHAS  720
RVRLLSQQER QVVPYSSPVD DGSVAQRDSF TNVRVNTQFS DPPVVAPALE NSNVLSEGQI  780
NDSILRMERK RKSEEARIAK EVEAHELRIR KELEKQDILR RKNEERMRKE MEKQDRERRK  840
EEERLMRERQ REEERLKREQ KREIERREKF LQKEYIRAEK MRQKEELRKE REVVKRKAAL  900
EKATARRLAK ESMELIEDEQ LELMELAATS KGLSSIICID LDTLQNLDAF RDSLVAFPPR  960
SVQLKGPFAI QPWINSEANI GNLLMVWRFL ITFADVLELW PFTLDEFVQA FHDYDSRLLG  1020
EIHVALLRLV IKDIEDVART PTGLGINQNG AANPGGGHPQ IVEGAYAWGF DIRNWQQHLN  1080
LLTWPEIFRQ LALSAGFGPQ LKKRSIAWSY TPDNHEGKGC QDAISNLRNG SAAVNAFAVM  1140
QEKGLLAPRR SRHRLTPGTV KFAAFHVLSL EGNKGLTVLD LADKIQKSGL RDLTTSKTPE  1200
ASISVALTRD TKLFERIAPS TYRVRAAYRK DPVDAEAILS AARKKIQIFE NGILAAEDVD  1260
DVERDDVEND EVERDEESEC EVDEDPEVDD LATPSVANKS PDDYNEVISF SENGKGSLSN  1320
DVGLAVKNEF DKDVLCSPVT GSKDAFCPSA SLKQCVLGAD ISTSHLDQEN MEIDESKSGE  1380
SWVQGLTEGE YSDLSVEERL SGLVALIGVA NEGNTIRIVL EDRLEAANAL KKQMWAEAQL  1440
DKSRLKEENV GRLDIPSLMG GKAEVQATGV EDGLSPLRDV DNRNIDASPV TAENEKSIHG  1500
SQGVQNQLNG VHVERTSAAQ DISMGSDNFL TQQLAYASKR SRSQLKSYIA HRAEEMYAYR  1560
SLPLGQDRRH NRYWQFVASA SRHDPGSGRI FIELNNGSWR LIDTEEAFDA LVTSLDTRGI  1620
RESHLRLMLQ KIEASFKENV QKNTHRPNNA GPTKNHVKNE ADEMDSSPDF PSHFDSPESA  1680
VCALNSDAAQ TSSSFRIELD SSETEKRAAL RRYQDFQKWM WKECSNSSTL CATKYGKERC  1740
RPLFDVCDVC LNCYYFEDFH CDTCHQTFDA FNRNFDFGEH VMQCKEKRML EPWNFDIPCT  1800
SLPLARRLLK TLIALVEVSI PPEALHLSWT DDHRKMWGEK LNASSSMDEL LQILTLVETA  1860
VKKDFLSSHF AMTEELLGSC KQSGVVRDYL DSGSVPVLPW IPHTTAAVAL RLHEIDSSIT  1920
YVKQAKAEPT ADKEVGEYLN QPMRLPTSRS ETELTEAGLN EYMREENSTH LKSGRNSFRR  1980
GRGGREQGRG KRWQKKVSNP KSGASRQNIR GNENLNQGLR TVGKRTQGQG SGRGRRTVRK  2040
RRMKNRAVEG TPLAHVSDMR SSPESGGESP RNLAEEWDDE KIDMRGDEQG GGFERVDTLE  2100
SEDDDQAVGY EQGSWEIGFD GTSSGWNGGL VEASDDDIDA SEDDNNVMEE VRDEDSEGDV  2160
DMSDASDEIL PNTMRNDDGT ESESSDDSSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	485	492	RRLKDKKE
2	856	862	LKREQKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	HB-other family protein