PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009599.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GATA

Protein Properties

Length: 267aa MW: 29942.3 Da PI: 9.2604

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009599.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	37.2	4e-12	6	36	1	33
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C++Cgt +T +WR + g+ tLCnaC ++ +++ PCP009599.1 6 CQHCGTLNTLQWR--SVGKDTLCNACAIKLKHR 36 ***********..889********99976 PP
2	GATA	32.5	1.2e-10	44	77	1	32
GATA 1 CsnCgttk.TplWRrgp.dgnktLCnaCGlyyrk 32 C+ Cgt+k T +WR+++ g k LC aC ++y++ PCP009599.1 44 CQDCGTKKsTLQWRKDGpKGMKALCDACYVRYKS 77 ************976699999*******97 PP
3	GATA	29.3	1.2e-09	125	152	1	28
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGl 28 C++Cgt ++ WR gp g+ tLC CGl PCP009599.1 125 CQHCGTGNSLRWRAGPLGTDTLCDNCGL 152 ***************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MIGGKCQHCG TLNTLQWRSV GKDTLCNACA IKLKHRSEIL RRKCQDCGTK KSTLQWRKDG 60 PKGMKALCDA CYVRYKSDII GRKCQRCGVG KIKPWQKWLE GTLGKNTLCN NCHIRYTAEI 120 KGRKCQHCGT GNSLRWRAGP LGTDTLCDNC GLSGGDLRAP VFNGSNYDFW SIKMKTIFKS 180 YDLWNLVDKG IESAESGDDS SDEDQKSVKS SMKINETRDA KALGIIQGAV SDEIFPRISN 240 FESSKTAWDV LQNFMVTKRL DLSNYNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24050.1	7e-09	GATA family protein