PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009084.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CO-like

Protein Properties

Length: 410aa MW: 44544 Da PI: 6.9478

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009084.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.3	3.1e-08	59	104	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C +e+ ++ C+ + lC +C +H+ H++vp+ PCP009084.1 59 VWMCGVCEQAPAAVTCKADAAALCVSCDADIHSAnplarrHERVPV 104 689*****************************66899999999986 PP
2	CCT	67.1	4.9e-23	335	378	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkF+K+irY+sRKa+Ae+RpR+KGrF+k++ PCP009084.1 335 REARVLRYREKRKNRKFQKTIRYASRKAYAETRPRIKGRFAKRN 378 9*****************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MGLQDRWTAA AVGLVDKPCD SCKTSAAALF CRAHLAFLCL ACDSRIHPAN KLTTRHERVW 60 MCGVCEQAPA AVTCKADAAA LCVSCDADIH SANPLARRHE RVPVEPFYDS AESIIVKSTT 120 TGPSSAAAAH NYLVPNGDVI FNTKDIENDA ASSWLIPNPN FNSKLHMDIA PDILKSSDDL 180 VFPEMDSLLE FDYPTSIHNI SGSGASNDSV VPVQPDPIPP PSFNMNYNLS GPADHNCFDL 240 DFCRSKLSSF FSYPTQSLSQ SVSSSSLDAG VVPDGNSLSD IPYRFGRNTS SNGSEPGDIS 300 YSFGPKASNK VSEAGVPVSA TPASQPATQL CGLDREARVL RYREKRKNRK FQKTIRYASR 360 KAYAETRPRI KGRFAKRNKT ETETEVGDRI YCSGPGIYIP DPQFGVVPTF

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MGLQDRWTAA AVGLVDKPCD SCKTSAAALF CRAHLAFLCL ACDSRIHPAN KLTTRHERVW  60
MCGVCEQAPA AVTCKADAAA LCVSCDADIH SANPLARRHE RVPVEPFYDS AESIIVKSTT  120
TGPSSAAAAH NYLVPNGDVI FNTKDIENDA ASSWLIPNPN FNSKLHMDIA PDILKSSDDL  180
VFPEMDSLLE FDYPTSIHNI SGSGASNDSV VPVQPDPIPP PSFNMNYNLS GPADHNCFDL  240
DFCRSKLSSF FSYPTQSLSQ SVSSSSLDAG VVPDGNSLSD IPYRFGRNTS SNGSEPGDIS  300
YSFGPKASNK VSEAGVPVSA TPASQPATQL CGLDREARVL RYREKRKNRK FQKTIRYASR  360
KAYAETRPRI KGRFAKRNKT ETETEVGDRI YCSGPGIYIP DPQFGVVPTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-100	CO-like family protein