PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009020.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 1261aa MW: 140023 Da PI: 6.6862

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009020.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	655	677	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G+C GdrC F+Hgp PCP009020.1 655 VPCIFFQK-GQCLKGDRCAFSHGP 677 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1261 aa Download sequence
MLLGVEKKRK EKEDSESAFT LRSQPPDCDD QTGGGGSDDC KDVDVVSVLP KCSTSNAADS 60 LGPKMASDRR LKDSTLVNSR IRNQEDPSLD YDSGHDAMGV SSSIFEFQKA ERAPQRVPLA 120 PFSKPAPSKW DDAQKWIASP TSNRPKMGQA QMQVGQGVGS RKAGSFGYGS KQLSTKVVVE 180 VPDQKVDIFE EPDTKRIDTN QSKMESGGQK CVSWEPDPYP IADSYGKSVL MVENSVGESA 240 INLSQHDSST AFHGTTTFIP PPSTARSVSM RDMGTEMTPI ASQEPSRTGT PVGATTPIRS 300 PTNSRPSTPS RAAQASSPIN QNPNKELSEK ELQMKTRREI MVLGTQLGKM NIAAWASKEE 360 DKGASTSQKT TPEEQPGKSI VETRAAAWEE AEKAKYMARF KREEMKIQAW ENHQKAKTEA 420 EMRKIEVEVE RIRGRANGKL MNKLAAARHK AQEKRAAAEA RRNRQAAKTE HQAEYIRKTG 480 RIPSLWRLFF KIGSASPFLS LSLSWNRSDS VTVRRRLNPI VAMVVGAQPQ PQPQQQQQQL 540 QQKPPQQPET SAEEEALKRN TDCVYFLASP LTCKKGSECE YRHSEYARVN PRDCWYWLNG 600 SCLNLKCAFR HPPLDGLLGS PAANSAGPSL PLSHPVATPT TPATHAAYNP SKQAVPCIFF 660 QKGQCLKGDR CAFSHGPNPM ASSKVLQTPA AAHGTEPSGL KKAFGGLQKC TQELKVPKVS 720 ATKSVGVPPE AKPAPKIPTA PIRNGVSIER NVPSTKALDD EALRYKATSV PPVINGGSTS 780 QANHLLQAHV SDYHGFQNGK DADEHLRESS PGFDVLVDDE HGDSDYYHGE ERFGRTRGHE 840 GRNLNSVNEY DLDRPVDYTS MADVDQERFC DPYDPYDRMQ GQYAWDQHRV SSERQLVGPA 900 RLERRGYRKS ESPENIDELD LRHRLSKHRR VNGLRSIVSH DYAVDGHVEE RNNRPRRDSQ 960 QLPPHEGSRI SRLHGRIKIP DGSSPVNGSD LRQEREVDRA RSRGRLSPGR PQISSHQGRL 1020 RDRIKGRVEE DYANERRNFG ASRVRGDIMD DRGDDFSRPK RLPELKVVKD AENKEQSYLG 1080 KRKSVMDNYQ QAEGDLSFEG PKPLSEILKR KREAEAAASG SRKSSAHNKR GNNQRESRES 1140 DQGDSQTAVT EVNNSLPTAA KEEPKFATAD AVGTEDEKID VVHGQSSEGH EAGEVEAEEG 1200 MIYEEENEIE GEDQREGEYD YEQGDEGDYN YEGENAEGEE EYLEEDEDGD DFAKKIGVVF 1260 S

Sequence ? help Back to Top

Protein Sequence Length: 1261 aa Download sequence

MLLGVEKKRK EKEDSESAFT LRSQPPDCDD QTGGGGSDDC KDVDVVSVLP KCSTSNAADS  60
LGPKMASDRR LKDSTLVNSR IRNQEDPSLD YDSGHDAMGV SSSIFEFQKA ERAPQRVPLA  120
PFSKPAPSKW DDAQKWIASP TSNRPKMGQA QMQVGQGVGS RKAGSFGYGS KQLSTKVVVE  180
VPDQKVDIFE EPDTKRIDTN QSKMESGGQK CVSWEPDPYP IADSYGKSVL MVENSVGESA  240
INLSQHDSST AFHGTTTFIP PPSTARSVSM RDMGTEMTPI ASQEPSRTGT PVGATTPIRS  300
PTNSRPSTPS RAAQASSPIN QNPNKELSEK ELQMKTRREI MVLGTQLGKM NIAAWASKEE  360
DKGASTSQKT TPEEQPGKSI VETRAAAWEE AEKAKYMARF KREEMKIQAW ENHQKAKTEA  420
EMRKIEVEVE RIRGRANGKL MNKLAAARHK AQEKRAAAEA RRNRQAAKTE HQAEYIRKTG  480
RIPSLWRLFF KIGSASPFLS LSLSWNRSDS VTVRRRLNPI VAMVVGAQPQ PQPQQQQQQL  540
QQKPPQQPET SAEEEALKRN TDCVYFLASP LTCKKGSECE YRHSEYARVN PRDCWYWLNG  600
SCLNLKCAFR HPPLDGLLGS PAANSAGPSL PLSHPVATPT TPATHAAYNP SKQAVPCIFF  660
QKGQCLKGDR CAFSHGPNPM ASSKVLQTPA AAHGTEPSGL KKAFGGLQKC TQELKVPKVS  720
ATKSVGVPPE AKPAPKIPTA PIRNGVSIER NVPSTKALDD EALRYKATSV PPVINGGSTS  780
QANHLLQAHV SDYHGFQNGK DADEHLRESS PGFDVLVDDE HGDSDYYHGE ERFGRTRGHE  840
GRNLNSVNEY DLDRPVDYTS MADVDQERFC DPYDPYDRMQ GQYAWDQHRV SSERQLVGPA  900
RLERRGYRKS ESPENIDELD LRHRLSKHRR VNGLRSIVSH DYAVDGHVEE RNNRPRRDSQ  960
QLPPHEGSRI SRLHGRIKIP DGSSPVNGSD LRQEREVDRA RSRGRLSPGR PQISSHQGRL  1020
RDRIKGRVEE DYANERRNFG ASRVRGDIMD DRGDDFSRPK RLPELKVVKD AENKEQSYLG  1080
KRKSVMDNYQ QAEGDLSFEG PKPLSEILKR KREAEAAASG SRKSSAHNKR GNNQRESRES  1140
DQGDSQTAVT EVNNSLPTAA KEEPKFATAD AVGTEDEKID VVHGQSSEGH EAGEVEAEEG  1200
MIYEEENEIE GEDQREGEYD YEQGDEGDYN YEGENAEGEE EYLEEDEDGD DFAKKIGVVF  1260
S