PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP008613.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 681aa    MW: 74775 Da    PI: 5.4631
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP008613.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.84.4e-1312976661374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv+lL++c+ea+  ++ +++++++a+l elasp+g+++ Rl ay+teAL+ r++r +++++++ +p++ +++++++ +  l+l+++vsPi+kf h+t 
  PCP008613.1 297 LVSLLTACVEAIGLKNIAAINHFIAKLGELASPKGSAISRLSAYYTEALSLRVTRLWPHVFQINAPRKFDRRDEDSGI-ELRLLNQVSPIPKFVHFTS 393
                  6899*****************************************************************976666665.569**************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fA +l++pfef++ v++rled++l++L+v
  PCP008613.1 394 NEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLAGFAGALNLPFEFHP-VVDRLEDVRLWMLHV 486
                  ***************************************************....***************************.7************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                  k++E++aVn+v+qlh++l + +  +   +++L l++s++P +v ++eqea+hn++++ +r++++l+yysa+fds+ ++lp es++rikvE++ +++ei
  PCP008613.1 487 KEHESVAVNCVFQLHKTLYDATGGA--LRDFLGLIRSTNPAIVLMAEQEAEHNESKLETRVSNSLKYYSAIFDSIGSSLPLESQARIKVEEM-FAQEI 581
                  *****************96554444..589**************************************************************.***** PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgslvlgWkdrpLvsvSaWr 374
                  +n++aceg++r erhe++ekWr+ +e+ GF+ v ++e+++ q + ll++++s+ y+v+++      ++l+l W+d+pL++vSaW+
  PCP008613.1 582 RNIIACEGSDRLERHESFEKWRKLMEQEGFRCVGITEREMLQSQFLLKMYASENYTVKKQekdgaAEALTLSWMDQPLYTVSAWT 666
                  ***************************************************999****766667677899**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    
MLAGCSSSTL LSPRHRLRSE AAAQLQACSF QLPSMSTQRL DLPCSFPRKD TSRSQPIRPV  60
GLSVEKSIDS KAGGCSLKQS IRLPPLATSG PVTATAAFVE TGKENHDQFW GEKKRGKRFA  120
EPVDDDESFR KRAKRKRGCG DNGGDGEGGG GLSLGQLGGG NFWFQPGFHL PPTTQPPFSL  180
TCSGDEERVC YVPAEEISQP LPLSNNPWLD SIVTEITDLG KKDGGGEASR GLVGEGSAGS  240
STSSESQSLA LRVNESASEH DTGNGTRNPY VPQGGAGVVA EEEEDDESEA EHLGFELVSL  300
LTACVEAIGL KNIAAINHFI AKLGELASPK GSAISRLSAY YTEALSLRVT RLWPHVFQIN  360
APRKFDRRDE DSGIELRLLN QVSPIPKFVH FTSNEILLRA FEGKDRVHII DFDIKQGLQW  420
PSLFQSLASR TNPPSHVRIT GIGESKQELN ETGDRLAGFA GALNLPFEFH PVVDRLEDVR  480
LWMLHVKEHE SVAVNCVFQL HKTLYDATGG ALRDFLGLIR STNPAIVLMA EQEAEHNESK  540
LETRVSNSLK YYSAIFDSIG SSLPLESQAR IKVEEMFAQE IRNIIACEGS DRLERHESFE  600
KWRKLMEQEG FRCVGITERE MLQSQFLLKM YASENYTVKK QEKDGAAEAL TLSWMDQPLY  660
TVSAWTPVDA AGSSSSFSQP S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein