PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP008550.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family BBR-BPC
Protein Properties Length: 314aa    MW: 35325 Da    PI: 9.8096
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP008550.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind384.81.3e-117731420301
    GAGA_bind  20 lkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqq 113
                  +     +q+m++++erda+i+ernla+sekkaa+aerdmaflqrd+a+aern a++erd+++++l +++nsl+    s++p+g+q+++g+k+++++qq
  PCP008550.1   7 M-----KQVMAIMSERDAAIQERNLAFSEKKAALAERDMAFLQRDAAIAERNSAIMERDSAIATLHYRDNSLNsgngSSCPPGCQISRGVKHMHHTQQ 99 
                  3.....59***************************************************************9999999******************99 PP

    GAGA_bind 114 lse....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader..................... 186
                  +++    p+++++++++r+++++++  +  ++++ ++      ++++k+p+e+k+++++kk++ks +k k+es+d +                     
  PCP008550.1 100 QQHvhhmPHMNEPTYGTRDMHTSDSITMPPETSVPTK------SRQPKRPREPKTTQPNKKPSKSPRKMKRESEDLNkmtfdklhdwkggqdmgsegd 191
                  77778899*************8887765544333333......3455566666666666666666666666666633467777889************ PP

    GAGA_bind 187 ........skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG 276
                          sk+++k +dl+ln+v++Dest+P+P+CsCtG lrqCYkWGnGGWqS+CCttt+S+yPLP+++++r+aR++grKmS++af+klL++L+aeG
  PCP008550.1 192 dlnkqvvvSKSDWKVQDLGLNQVAYDESTMPAPMCSCTGLLRQCYKWGNGGWQSSCCTTTMSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLTAEG 289
                  ************************************************************************************************** PP

    GAGA_bind 277 ydlsnpvDLkdhWAkHGtnkfvtir 301
                  +dlsnpvDLkdhWAkHGtn+++ti+
  PCP008550.1 290 HDLSNPVDLKDHWAKHGTNRYITIK 314
                  ************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MHNQPSMKQV MAIMSERDAA IQERNLAFSE KKAALAERDM AFLQRDAAIA ERNSAIMERD  60
SAIATLHYRD NSLNSGNGSS CPPGCQISRG VKHMHHTQQQ QHVHHMPHMN EPTYGTRDMH  120
TSDSITMPPE TSVPTKSRQP KRPREPKTTQ PNKKPSKSPR KMKRESEDLN KMTFDKLHDW  180
KGGQDMGSEG DDLNKQVVVS KSDWKVQDLG LNQVAYDEST MPAPMCSCTG LLRQCYKWGN  240
GGWQSSCCTT TMSMYPLPAV PNKRHARVGG RKMSGSAFNK LLSRLTAEGH DLSNPVDLKD  300
HWAKHGTNRY ITIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-132BBR-BPC family protein