PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP008310.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

YABBY

Protein Properties

Length: 409aa MW: 46068 Da PI: 9.8201

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP008310.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	164.3	9.3e-51	215	357	24	169
YABBY 24 vsvPstslfkv.vtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp.v 115 vsvP +sl+++ vtvrCGhC+ llsvn++kas +lla+ ++e++eel ee+ k+n +s+s +s+ s+nede++ + p v PCP008310.1 215 VSVPCSSLSMLaVTVRCGHCSCLLSVNMMKASfvplHLLASLT------QDEQKEELCLEEMVEKQNSLDMRSPSMVISN---SDNEDEDIISMNPiV 303 9*****98659**********9998833333333333......3445555555555555555555556655555...789999998888879 PP YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++PPekrqr+Psaynrfikeei+r+ka+nP+++h+eafs+aaknWa fP+i ++ PCP008310.1 304 NKPPEKRQRAPSAYNRFIKEEIRRLKAENPSMTHKEAFSTAAKNWAQFPPIQYK 357 *************************************************886 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN 60 IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL AVLQFYKVDD SGKVQRLRKE 120 CPNAECGAGT FMANHFDRHY CGNGYLSVQQ CNSATARRTG LGPWGSERVS HPGFMYGPLI 180 QNIIFIRPAV THGYLHGFTV KNIGPFKKKK KKTKVSVPCS SLSMLAVTVR CGHCSCLLSV 240 NMMKASFVPL HLLASLTQDE QKEELCLEEM VEKQNSLDMR SPSMVISNSD NEDEDIISMN 300 PIVNKPPEKR QRAPSAYNRF IKEEIRRLKA ENPSMTHKEA FSTAAKNWAQ FPPIQYKEDG 360 PDGESCTCSE LREENVAWKS DMPESNMAKV SARERPQGIP YGQGHPSSE

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN  60
IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL AVLQFYKVDD SGKVQRLRKE  120
CPNAECGAGT FMANHFDRHY CGNGYLSVQQ CNSATARRTG LGPWGSERVS HPGFMYGPLI  180
QNIIFIRPAV THGYLHGFTV KNIGPFKKKK KKTKVSVPCS SLSMLAVTVR CGHCSCLLSV  240
NMMKASFVPL HLLASLTQDE QKEELCLEEM VEKQNSLDMR SPSMVISNSD NEDEDIISMN  300
PIVNKPPEKR QRAPSAYNRF IKEEIRRLKA ENPSMTHKEA FSTAAKNWAQ FPPIQYKEDG  360
PDGESCTCSE LREENVAWKS DMPESNMAKV SARERPQGIP YGQGHPSSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	81	LRGGAKKRK
2	78	82	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	3e-53	YABBY family protein