PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP008264.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 852aa    MW: 92946.8 Da    PI: 6.4095
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP008264.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-182482357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PCP008264.1 24 KYVRYTPEQVEALERVYSECPKPSSLKRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 82
                 6789*****************************************************97 PP
2START171.26.8e-541733792203
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  e+l  i  g  g+++l +++
  PCP008264.1 173 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRKSWFRDCRCLEVLSLIPAGngGTIELVYMQ 269
                  68999*****************************************************.7788888877****************9999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l++ Rdf+++Ry+ +l++g++v++++S++s +  p+   s+s+vRae+lpSg+li+p+++g+s + +v+hvdl++++++++lrsl++s+ + 
  PCP008264.1 270 TYAPTTLAAaRDFWTLRYTTSLEDGSLVVCERSLTSSTGGPTgptSASFVRAEMLPSGYLIRPCEGGGSIINIVDHVDLDAWSVPEVLRSLYESCKIL 367
                  ***************************************999999***************************************************** PP

                  HHHHHHHHTXXX CS
        START 192 gaktwvatlqrq 203
                  ++kt+ ++l++ 
  PCP008264.1 368 AQKTTISALRHI 379
                  *******99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    
MALLMHRDSP GSSSGGRQQM DSSKYVRYTP EQVEALERVY SECPKPSSLK RQQLIRECPI  60
LSNIEPKQIK VWFQNRRCRE KQRKESSRLQ TVNRKLSAMN KLLMEENDRL QKQVSHLVYE  120
NGFMKQQLHT ASGTTTDNSC ESVVMSGQHQ QQQNPTPQHP KRDANNPAGL LAIAEETLAE  180
FLSKATGTAV DWVQMIGMKP GPDSIGIVAV SRNCSGVAAR ACGLVSLEPT KVAEILKDRK  240
SWFRDCRCLE VLSLIPAGNG GTIELVYMQT YAPTTLAAAR DFWTLRYTTS LEDGSLVVCE  300
RSLTSSTGGP TGPTSASFVR AEMLPSGYLI RPCEGGGSII NIVDHVDLDA WSVPEVLRSL  360
YESCKILAQK TTISALRHIR QIAQESSGEI QHGGGRQPAV LRTFCQRLCS GFNDAVNGFA  420
DDGWTLMGSD GVEDVTIAIN SSPNKVLGSQ YNTSIFSPFG GGVLCAKASM LLQSVPPALL  480
VRFLREHRSE WADYGVDAYS AACLKASPYA VPLARGGGFP TTQNILPLAQ TVEHEEFLEV  540
VRLEGPAFSP EDVALAQDMY LLQLCSGVDE NAVGACAQLV FAPIDESFAD DAPLLPSGFH  600
VIPLDPKADG PTASRTLDLA STLEIGTSGA RAVNDPDGNG YNLRSVLTIA FQFTFENHLR  660
DNVAAMARQY VRSVVSSVQR VAMAIAPSRL SSQIGPKPLP GSPEAHTLAR WIFRSYRIHT  720
GGELFRVDIS SGDAVLKQLW RHSDAIMCCS VKTNASPVFT FANQAGLDML ETTLVALQDI  780
TLDKILDEAG RKLLCSEFSK ITQQGFAYLP AGICASSMGR PVSYEQAVAW KVVNDDDSNH  840
CLALMFMNWS FV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein