PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP008229.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 316aa MW: 35997.8 Da PI: 6.4295 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.3e-12 | 180 | 205 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ PCP008229.1 180 YQPDICKDYKETGYCGYGDSCKFMHD 205 67789********************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence |
MADSGENKEP GEVCNFFRKP SRRQNIRKRR TDEDDEEDDS KSGTSLSNQR KAQKSDGKLF 60 FSTGPSKTFV SDDRAVFEFE SSKEIQVEND SRATATMETE TEFSRDARAV RERVLKQAEE 120 ALKGKGKSTG NEKLYKGIHG YTDYKAGFRR ELTVASEKAG GAHGPLRASA HIRTSTRFDY 180 QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQMEKEWD EAEKARKRKL AMGEDDVDET 240 EEDDDDEDDG GLPFACFICR QPFVDPVVTK CNHYFCEHCA LKHHSKNKKC FVCDKPTLGI 300 FNTAHEIRKR MAAEGK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-160 | C3H family protein |