PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP008212.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 609aa MW: 67328.6 Da PI: 6.5219

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP008212.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	5e-13	440	486	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq PCP008212.1 440 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 486 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MGLGGGVWDD EDKAMVAAVL GTRAFDYLIS SAVSSNENSC MGIGTDENLH NKLSDLVERP 60 NASNFSWNYA IFWQISRSKS GDWVLCWGDG SCREPKEGEV SETTRILGLR LDDGTQQRMR 120 KIVLQKLHNL FGSSDEYNGA LGLDRVTDME MFLLASMYFS FPRGEEGPGK CFASGEHVWL 180 LDLLKSGSEY CVRSFLAKSA GIQTIVLVPT DVGVVELGSV RCIGERLELL QSIRSLFSTQ 240 SSHMRAKPVA GVPMIGRRRD ENVHLTNLSP VERGEAVPKI FGQDLNSGNS VRPRYREKLA 300 VRKLEERPWD VYSNGNRIAF SSPRNGIHGS NWPHNHDVKQ GSPTEMYASQ SPVNNLQELV 360 DGVRDDFRHN HYQPQKQVPM QIDFSGATSR PSVAPRPIGV DSENSDAEAP CKEDQPGTAD 420 ERRPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLGDAIA 480 YINELQAKLK VMEAERENLG GTSRDASALG ASSGMEIQNQ APEVDIQAVN DEVIVRVSSP 540 LDSHPASRVV EAFKEAQITV VESKLAAADD TVLHTFVVKS QGSERLTKEK LIAAFSRESN 600 SLHSLSSVG

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MGLGGGVWDD EDKAMVAAVL GTRAFDYLIS SAVSSNENSC MGIGTDENLH NKLSDLVERP  60
NASNFSWNYA IFWQISRSKS GDWVLCWGDG SCREPKEGEV SETTRILGLR LDDGTQQRMR  120
KIVLQKLHNL FGSSDEYNGA LGLDRVTDME MFLLASMYFS FPRGEEGPGK CFASGEHVWL  180
LDLLKSGSEY CVRSFLAKSA GIQTIVLVPT DVGVVELGSV RCIGERLELL QSIRSLFSTQ  240
SSHMRAKPVA GVPMIGRRRD ENVHLTNLSP VERGEAVPKI FGQDLNSGNS VRPRYREKLA  300
VRKLEERPWD VYSNGNRIAF SSPRNGIHGS NWPHNHDVKQ GSPTEMYASQ SPVNNLQELV  360
DGVRDDFRHN HYQPQKQVPM QIDFSGATSR PSVAPRPIGV DSENSDAEAP CKEDQPGTAD  420
ERRPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLGDAIA  480
YINELQAKLK VMEAERENLG GTSRDASALG ASSGMEIQNQ APEVDIQAVN DEVIVRVSSP  540
LDSHPASRVV EAFKEAQITV VESKLAAADD TVLHTFVVKS QGSERLTKEK LIAAFSRESN  600
SLHSLSSVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	422	430	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein