PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP008208.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 695aa    MW: 77930.3 Da    PI: 6.825
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP008208.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.3e-23127227198
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f+k+lt sd++++g +++ +k+a+e+     +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++el+
  PCP008208.1 127 FCKILTASDTSTHGGFSVLRKHATEClppldMNQATPTQELIAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNGELR 222
                  99****************************9555556679************************************************..3489999* PP

                  EEEE- CS
           B3  94 vkvfr 98 
                  v+v+r
  PCP008208.1 223 VGVRR 227
                  ***98 PP
2Auxin_resp93.24.4e-31253332183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+ tk+ F v+ +Pr+  s+F+v ++k+++a+++k+s+GmRf+m+fe+e+s+err++Gt+v v dl+p +W++SkWrsLk
  PCP008208.1 253 ASHALMTKTLFVVYSKPRT--SQFIVCLNKYLEAINNKFSLGMRFRMRFEGEESPERRFTGTIVEVGDLSP-QWSESKWRSLK 332
                  6899**************6..9*************************************************.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    
MAHLECESSI SRAETDLRGD DLYTELWKLC AGPLVDVPRP RDKVFYFPQG HMEQLEASTN  60
QELNQQIPLF NLPSKILCSV VNIRLLAEQE TDEVYAQITL HPEEDQSEPT SPDPCKPEAP  120
KPTVHWFCKI LTASDTSTHG GFSVLRKHAT ECLPPLDMNQ ATPTQELIAK DLHGYEWKFK  180
HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGDNGE LRVGVRRLAR QQSQMPSSVI  240
SSTSMHLGVL ATASHALMTK TLFVVYSKPR TSQFIVCLNK YLEAINNKFS LGMRFRMRFE  300
GEESPERRFT GTIVEVGDLS PQWSESKWRS LKVQWDEHAA VQRPERVSPW DIELFVASAP  360
LNLAQPVVKS KRPRPVEIAS SEVTTNSAAS AFWYHSSPQT AELNQLGGVP EVQSSSSQIV  420
WPMRQKESNS SSYSSSRVCS DGIWPSSPNV NVSLSLFPDS KESNKNVTMG SVLSSFASPI  480
TSKPNNVPMH DQVEKGKKSG TSGFRLFGCN LTNNTKTTCP QEIEPVFKTM PSGAKGPIPA  540
DAFESDQILD VLKLSKEQKQ VILEASPKET QGKQGSTLST RTRTKVQMQG VAVGRAVDLT  600
ALKGYDHLID ELEKMFEIKG ELRPQNKWAV VFTDDENDMM LMGDDQWPDF CKLVKKIFIY  660
SSDEVQKMNR FKLQSSSLDC EGTVSMDSER RSEHD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371375KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0ARF family protein