PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP007558.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 356aa MW: 39459.6 Da PI: 8.5525

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP007558.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.6	1.4e-45	196	295	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal++ PCP007558.1 196 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQ 293 7**********************************************************************************************999 PP DUF260 99 ee 100 +e PCP007558.1 294 AE 295 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MDRSSKPFQF HSCWEICKGW VSFEDPPQRA PTPVFGTTSS AADMDEDGSP TIQQTRVENP 60 SSGESSIPRV MGRNKARRLK EKGKANDDYA AQHEVAASLR LLAEQNALQA EERKCRHEER 120 AKQIQEEMDD KNMERNTSNY TPMNRPLSFY FKAKLGYPTK LGLLHTVGGC VGPTKIRHVA 180 SMKENGSSRK QGAPSPCAAC KLLRRRCAQD CVFAPYFPAD EPQKFANVHK VFGASNVNKM 240 LQELPEHQRG DAVSSMVYEA NARVRDPVYG CVGAISSLQQ QIDVLQTQLA LAQAEVVHLK 300 VRQTASFSNH GLSPASPSNS RSPSSKFMGS QARPIFDMDM MVDHTSLGMG ESMWSC

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MDRSSKPFQF HSCWEICKGW VSFEDPPQRA PTPVFGTTSS AADMDEDGSP TIQQTRVENP  60
SSGESSIPRV MGRNKARRLK EKGKANDDYA AQHEVAASLR LLAEQNALQA EERKCRHEER  120
AKQIQEEMDD KNMERNTSNY TPMNRPLSFY FKAKLGYPTK LGLLHTVGGC VGPTKIRHVA  180
SMKENGSSRK QGAPSPCAAC KLLRRRCAQD CVFAPYFPAD EPQKFANVHK VFGASNVNKM  240
LQELPEHQRG DAVSSMVYEA NARVRDPVYG CVGAISSLQQ QIDVLQTQLA LAQAEVVHLK  300
VRQTASFSNH GLSPASPSNS RSPSSKFMGS QARPIFDMDM MVDHTSLGMG ESMWSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-78	LBD family protein