PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP007521.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 27402 Da PI: 5.287 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.7 | 6.2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRr g+lKKA+EL +LCdaevaviifs+tgkl+e+ss PCP007521.1 9 KRIENANSRQVTFSKRRSGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 63.9 | 5.7e-22 | 86 | 161 | 12 | 87 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 + +++ ++el++Lk+e+ +Lq++q +llG++L++LslkeLqqLeqqL+++l +++++K++ll+eq+e+++ + +el PCP007521.1 86 EIQKQDCKELDNLKDEYAKLQKKQLRLLGKELTDLSLKELQQLEQQLNEGLLTVKERKEQLLTEQLEQSRIQVEEL 161 4467899**************************************************************9988887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MGRGKIEIKR IENANSRQVT FSKRRSGLLK KAQELAILCD AEVAVIIFSN TGKLFEFSSA 60 GMMRTLSRYN KCLDSSEDAP EEGKAEIQKQ DCKELDNLKD EYAKLQKKQL RLLGKELTDL 120 SLKELQQLEQ QLNEGLLTVK ERKEQLLTEQ LEQSRIQVEE LRCLFPQTDS VVQSYLEYYP 180 VEKTKSLVNH GVTHSPDLVS NFAFENGDSD TTLQLGLPSD ACGKRKAPER EANSNDSGSQ 240 LGL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 7e-63 | MIKC_MADS family protein |