PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP007190.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 403aa MW: 44320.9 Da PI: 7.0538

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP007190.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.7	9.6e-16	35	126	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+++ + +L++a ++ +l+rg+l++++W+ev++++ + ++ +r+ +qCk++++ ++k+yk +k + ++ + + +s++p+f++l+a PCP007190.1 35 CWSEEATSTLVDAWGRRYIELNRGNLRQKDWQEVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKVEKVRVSSSNGTLTSSWPFFERLDA 126 7**************************************99999*****************9999999988888889****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MGDLTDLQIT PFNAGTTAST PPSSKPRPMP VREDCWSEEA TSTLVDAWGR RYIELNRGNL 60 RQKDWQEVAD AVNALHGHTK KTHRTDVQCK NRIDTIKKKY KVEKVRVSSS NGTLTSSWPF 120 FERLDALIGS NVKKASPSPH SPSLPVAVPL PLGYRKTPSS APVVTAVALP QKRSASTAAL 180 DEGFFRMNYS AVAAAAAAAA GAEDEDDEDE DEDDDDNDEA DEEVEMARDS GGEVGSGGGG 240 GEGLKRLARA IERFGEVYQR VEAEKLRQMV ELEKQRIQFA NELEVERMRM IMDTQVQLER 300 IKHGKRSGSN GEANVSYFLC QRQKGLLSTN RKLNLWIVTQ QVKTMAVKTV FTAVGYETSG 360 DGTKYWVVKS SQKMGKVDSM AAMPKDGLSV IGIYNGMIKN GKP

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MGDLTDLQIT PFNAGTTAST PPSSKPRPMP VREDCWSEEA TSTLVDAWGR RYIELNRGNL  60
RQKDWQEVAD AVNALHGHTK KTHRTDVQCK NRIDTIKKKY KVEKVRVSSS NGTLTSSWPF  120
FERLDALIGS NVKKASPSPH SPSLPVAVPL PLGYRKTPSS APVVTAVALP QKRSASTAAL  180
DEGFFRMNYS AVAAAAAAAA GAEDEDDEDE DEDDDDNDEA DEEVEMARDS GGEVGSGGGG  240
GEGLKRLARA IERFGEVYQR VEAEKLRQMV ELEKQRIQFA NELEVERMRM IMDTQVQLER  300
IKHGKRSGSN GEANVSYFLC QRQKGLLSTN RKLNLWIVTQ QVKTMAVKTV FTAVGYETSG  360
DGTKYWVVKS SQKMGKVDSM AAMPKDGLSV IGIYNGMIKN GKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	2e-42	Trihelix family protein