PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP006918.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 778aa MW: 88756.8 Da PI: 7.3977 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.3 | 1.1e-24 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rien + rqvtf+kRr+g++KK +ELSvLCda++ ++ifsstgk++ y+s PCP006918.1 9 SRIENRTTRQVTFAKRRAGLIKKTHELSVLCDAQIGLVIFSSTGKMFQYCS 59 59***********************************************96 PP | |||||||
2 | K-box | 58.4 | 3.1e-20 | 94 | 179 | 11 | 98 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ e+++ el+k+++e++ L+ ++ ++ GedL + +L +Le+qLe+s++++R++K e+l +q+++l k+l+een++L + + PCP006918.1 94 TK--EYMNAELRKMRRETQHLELSLQRYTGEDLRCVRFDDLVELEHQLEESVNRVRARKFEVLQQQTDNLLATTKRLEEENEQLFHLI 179 44..89*****************************************************************************97755 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 778 aa Download sequence |
MGRGKITISR IENRTTRQVT FAKRRAGLIK KTHELSVLCD AQIGLVIFSS TGKMFQYCSE 60 SSSMEELIQR YQVTKGIRVP QHNDTCGIPC NLWTKEYMNA ELRKMRRETQ HLELSLQRYT 120 GEDLRCVRFD DLVELEHQLE ESVNRVRARK FEVLQQQTDN LLATTKRLEE ENEQLFHLIK 180 AHQAAAFGHD QAHLEAHEQV ENLEMLPKSE ERRYVLDQFP FGGEEQPSSV LQLATLQPQP 240 QFNPYPHQPD HHHPGLLDFN LSGPSMYGPH QAPKTTGMVS TSSELQSSKA NKPSARSSTS 300 LDAVHRKTLT QFFSVARKSS LLKQSLAIIV VVLVLYAFHN TFHNTFLTPA ATSKLENALP 360 SFSSASSTTQ ENQLNLQGKP VKVYLYDLPK RFTYGVIEHH SLARGGRPDD DVSKLKYPGH 420 QYMGEWYLFQ DLLKPESERV GSPVERVLDP EEADLFYVPF FSSLSLIVNS AQPASGSEKP 480 LYSDEENQVA LIEWLESQEY WKRNNGRDHV IMASDPNALH IVIDKVKNCV LLVSDFGRLK 540 EDQGSLVKDV IVPYSHRINT YTGDISVENR NTLLFFMGNR FRKDGGKIRD LLFQLLENEE 600 DVIVKHGTQS TENRRAAARG MHTSKFCLNP AGDTPSACRL FDSIVSLCVP VIISDSIELP 660 FEDVIDYRKI AIFVESNAAL KPGFLVSMLR GIPTERILEY QTELNKILFQ HCKEAKVRHY 720 FQYGEPNGSE NEIWRQIAQK LPFIKLTINR ERRLVKRDSN VRDCSCLCSN QNGIRTSL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 3e-53 | MIKC_MADS family protein |