PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP006918.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 778aa    MW: 88756.8 Da    PI: 7.3977
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP006918.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.31.1e-24959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 +rien + rqvtf+kRr+g++KK +ELSvLCda++ ++ifsstgk++ y+s
  PCP006918.1  9 SRIENRTTRQVTFAKRRAGLIKKTHELSVLCDAQIGLVIFSSTGKMFQYCS 59
                 59***********************************************96 PP

2K-box58.43.1e-20941791198
        K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  ++  e+++ el+k+++e++ L+ ++ ++ GedL    + +L +Le+qLe+s++++R++K e+l +q+++l    k+l+een++L + +
  PCP006918.1  94 TK--EYMNAELRKMRRETQHLELSLQRYTGEDLRCVRFDDLVELEHQLEESVNRVRARKFEVLQQQTDNLLATTKRLEEENEQLFHLI 179
                  44..89*****************************************************************************97755 PP

Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    
MGRGKITISR IENRTTRQVT FAKRRAGLIK KTHELSVLCD AQIGLVIFSS TGKMFQYCSE  60
SSSMEELIQR YQVTKGIRVP QHNDTCGIPC NLWTKEYMNA ELRKMRRETQ HLELSLQRYT  120
GEDLRCVRFD DLVELEHQLE ESVNRVRARK FEVLQQQTDN LLATTKRLEE ENEQLFHLIK  180
AHQAAAFGHD QAHLEAHEQV ENLEMLPKSE ERRYVLDQFP FGGEEQPSSV LQLATLQPQP  240
QFNPYPHQPD HHHPGLLDFN LSGPSMYGPH QAPKTTGMVS TSSELQSSKA NKPSARSSTS  300
LDAVHRKTLT QFFSVARKSS LLKQSLAIIV VVLVLYAFHN TFHNTFLTPA ATSKLENALP  360
SFSSASSTTQ ENQLNLQGKP VKVYLYDLPK RFTYGVIEHH SLARGGRPDD DVSKLKYPGH  420
QYMGEWYLFQ DLLKPESERV GSPVERVLDP EEADLFYVPF FSSLSLIVNS AQPASGSEKP  480
LYSDEENQVA LIEWLESQEY WKRNNGRDHV IMASDPNALH IVIDKVKNCV LLVSDFGRLK  540
EDQGSLVKDV IVPYSHRINT YTGDISVENR NTLLFFMGNR FRKDGGKIRD LLFQLLENEE  600
DVIVKHGTQS TENRRAAARG MHTSKFCLNP AGDTPSACRL FDSIVSLCVP VIISDSIELP  660
FEDVIDYRKI AIFVESNAAL KPGFLVSMLR GIPTERILEY QTELNKILFQ HCKEAKVRHY  720
FQYGEPNGSE NEIWRQIAQK LPFIKLTINR ERRLVKRDSN VRDCSCLCSN QNGIRTSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-53MIKC_MADS family protein