PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP006564.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 829aa    MW: 88811.8 Da    PI: 6.4738
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP006564.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.95.9e-1264578162374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   +lLl+cAeavs+++  +a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y++lp s+ + + +++ ++a+++f+ +sP++kfsh+taN
  PCP006564.1 457 LTLLLQCAEAVSADNYDEATKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYASLPHSSVPITYTQKMVSAFQVFNGISPFVKFSHFTAN 554
                  579*****************************************************************9999************************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  qaI ea+e+e+rvHi+D+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s  +le+tg+rL++fA++lg+pfef + va+++ +l++e+L+++
  PCP006564.1 555 QAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMVALEATGKRLSDFADKLGLPFEFFP-VAEKVGNLDPERLNIS 647
                  **************************************************....***************************.7*************** PP

         GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                  ++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++++eseer++vE++ll+rei+
  PCP006564.1 648 KREAVAVHWLQ--HSLYDVTGSDSN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIR 738
                  **********9..999999999999....**********************.899******************************************* PP

         GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  nv+a  g +r  + + +++Wre+++++GF+ ++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaWr
  PCP006564.1 739 NVLAVGGPSRSGEVK-FHNWREKFQQSGFRGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWR 816
                  *********888776.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    
MAACALLGDN VGGHISGNGS NKNNSSSHGG GGGSPSCPMN NSTTNSNSSS VEQQPTKMVR  60
KRMASEIEVQ TTPTSRTAGS DYFQLSRRGI INNSPPVQPV YPNPYQNPNP SKVNSSMFYP  120
NYSTMLLPVP SSTNLTALTS AGGALLSPAS PSPSPSPSPS PSSAAAAGSW GPIDPLSFHR  180
SLPIQPTTTT TQITTTPAVC GFSGLPLFPP EKTPPSNPTT PATTISAMED SSSAATAWID  240
GIIKDLIHSS TNVSIPQLIH NVREIIFPCN PSLAALLEYR LRSISEPPPP PLPLPVPSFN  300
PTPIPDMRSR QQGGPGPGAL KLNLDSGALH DVAIFNTSTA DNNELYLQSW SGGGGGVGLS  360
LPQPNPTHVP MTCNQTNPHH QSPSFNQAIH QTQDKQLENS SSSSPAAEST TPTAAPAPTT  420
ATATAPPQPT TSAVSLLREK KEEMRQQKRD EEGLHLLTLL LQCAEAVSAD NYDEATKMLL  480
EISELSTPFG TSAQRVAAYF SEAMSARLVS SCLGIYASLP HSSVPITYTQ KMVSAFQVFN  540
GISPFVKFSH FTANQAIQEA FEREDRVHIV DLDIMQGLQW PGLFHILASR PGGPPYVRLT  600
GLGTSMVALE ATGKRLSDFA DKLGLPFEFF PVAEKVGNLD PERLNISKRE AVAVHWLQHS  660
LYDVTGSDSN TLWLLQRLAP KVVTVVEQDL SHAGSFLGRF VEAIHYYSAL FDSLGASYGE  720
ESEERHVVEQ QLLSREIRNV LAVGGPSRSG EVKFHNWREK FQQSGFRGIS LAGNAATQAT  780
LLLGMFPSDG YTLVEDNGTL KLGWKDLCLL TASAWRPPYH AAPNPNLHY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein