PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP006229.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARF

Protein Properties

Length: 698aa MW: 76739.8 Da PI: 7.2274

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP006229.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.9	1.9e-23	121	222	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + +++ PCP006229.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVSGDSIVFL--RAENGD 214 89**************************996555555..89*******************************************..448899 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ PCP006229.1 215 LCVGIRRA 222 9**997 PP
2	Auxin_resp	113.5	2e-37	290	373	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF+vk + v++al++++++GmRfkmafetedss++++ +Gt+++v+ ++p+rWp+S+Wr+L+ PCP006229.1 290 AATLAANGQPFEVVYYPRASTPEFCVKSSLVKAALQIRWCPGMRFKMAFETEDSSRISWfMGTISSVQVAEPLRWPESPWRLLQ 373 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MITFMDSKEK LKEGDRCLDP QLWHACAGGM VQMPPVNAKV FYFPQGHAEH ACGPVDFRNC 60 PRVPPHILCR VAAIKFMADP ETDEVYAKIR LVPLNGAEAG YEDDGIGGLN GTETPDKPAS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT 180 PRRHLLTTGW STFVNHKKLV SGDSIVFLRA ENGDLCVGIR RAKRGIGGGS ESSSGWNPTG 240 GNCTVPYGGF SAFLREDENK LMKNGHGNGS NSNGSLMGKG KVGPESVFEA ATLAANGQPF 300 EVVYYPRAST PEFCVKSSLV KAALQIRWCP GMRFKMAFET EDSSRISWFM GTISSVQVAE 360 PLRWPESPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIHLTPFSPP RKKMRLPQHP 420 DFPFEGQLPM PTFSGNLLGP SSPFGCLPDK TPAGMQGARH AHYGLSLSDM HLNKLHTGLF 480 PAGFPPLDHA AAPTKFSNNT MIQKPTMSEN LSCLLTMSHS TQTSKKPDDV KPTQLILFGR 540 PILTEQQISL SSSGDTVSPV LTGNSSSDGN ADKMANHSDN SGSALQQSIQ ERSSCEGFHW 600 YKDNRHETEP NLETGHCKVF MESEDVGRTL DLSLLGSYHD LYRKLADMFG IDNSETLNHV 660 LYRDGTGAVK HVGDEPFRYG SIPIESCNGS KGRRFLSF

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MITFMDSKEK LKEGDRCLDP QLWHACAGGM VQMPPVNAKV FYFPQGHAEH ACGPVDFRNC  60
PRVPPHILCR VAAIKFMADP ETDEVYAKIR LVPLNGAEAG YEDDGIGGLN GTETPDKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV SGDSIVFLRA ENGDLCVGIR RAKRGIGGGS ESSSGWNPTG  240
GNCTVPYGGF SAFLREDENK LMKNGHGNGS NSNGSLMGKG KVGPESVFEA ATLAANGQPF  300
EVVYYPRAST PEFCVKSSLV KAALQIRWCP GMRFKMAFET EDSSRISWFM GTISSVQVAE  360
PLRWPESPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIHLTPFSPP RKKMRLPQHP  420
DFPFEGQLPM PTFSGNLLGP SSPFGCLPDK TPAGMQGARH AHYGLSLSDM HLNKLHTGLF  480
PAGFPPLDHA AAPTKFSNNT MIQKPTMSEN LSCLLTMSHS TQTSKKPDDV KPTQLILFGR  540
PILTEQQISL SSSGDTVSPV LTGNSSSDGN ADKMANHSDN SGSALQQSIQ ERSSCEGFHW  600
YKDNRHETEP NLETGHCKVF MESEDVGRTL DLSLLGSYHD LYRKLADMFG IDNSETLNHV  660
LYRDGTGAVK HVGDEPFRYG SIPIESCNGS KGRRFLSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein