PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP006149.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 408aa MW: 46406.4 Da PI: 9.5344 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.7 | 2.3e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k i+nk +rqvtfskRr g++KKA ELSvLC++ev ++ifs +g+lye++s PCP006149.1 9 KLIDNKLRRQVTFSKRRSGLIKKARELSVLCGVEVGLVIFSAKGRLYEFCS 59 569**********************************************96 PP | |||||||
2 | K-box | 25.9 | 4e-10 | 144 | 209 | 16 | 80 |
K-box 16 slqqelakLkkeie.nLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 + + e + L++ + +L+ +q + +dL++L++ eL qLe++L+ l++ Rs+K++l++e l PCP006149.1 144 KHNAECSDLRAGASlSLKMSQSGMEAQDLDNLDVPELTQLEKELDALLRQTRSRKTQLMMETRTAL 209 55666666666554368999999999**********************************987665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence |
MGRGKVELKL IDNKLRRQVT FSKRRSGLIK KARELSVLCG VEVGLVIFSA KGRLYEFCSG 60 ERRKNSLSGC FAEYFRGKFV YSLCIFVVVK MGIGYVLQLG LICKEERCSL LHKGRSLGKL 120 LERYQMHSEE EISASKNAGG TDKKHNAECS DLRAGASLSL KMSQSGMEAQ DLDNLDVPEL 180 TQLEKELDAL LRQTRSRKTQ LMMETRTALI ETLSDHLITE KQLKEEKRLI ENEKLTILRK 240 RRKGRDGGDN GGKHRCFGPC QKISLQEQRE STSWQEGSWI MYECSLKDYP YLLLAMMVMS 300 CQLRKSDRTT EKRQGKFKAT VVASAGGDCD DTAAQLRAKK KIPRKTDDKL VAADSISTPD 360 SMSLHDVMDD PYSFINRIDV QHHSSFFHFF DLQKTLRTSH YSLDSITN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 4e-28 | MIKC_MADS family protein |