PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP006149.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 408aa    MW: 46406.4 Da    PI: 9.5344
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP006149.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.72.3e-26959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k i+nk +rqvtfskRr g++KKA ELSvLC++ev ++ifs +g+lye++s
  PCP006149.1  9 KLIDNKLRRQVTFSKRRSGLIKKARELSVLCGVEVGLVIFSAKGRLYEFCS 59
                 569**********************************************96 PP

2K-box25.94e-101442091680
        K-box  16 slqqelakLkkeie.nLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 
                  + + e + L++  + +L+ +q  +  +dL++L++ eL qLe++L+  l++ Rs+K++l++e    l
  PCP006149.1 144 KHNAECSDLRAGASlSLKMSQSGMEAQDLDNLDVPELTQLEKELDALLRQTRSRKTQLMMETRTAL 209
                  55666666666554368999999999**********************************987665 PP

Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    
MGRGKVELKL IDNKLRRQVT FSKRRSGLIK KARELSVLCG VEVGLVIFSA KGRLYEFCSG  60
ERRKNSLSGC FAEYFRGKFV YSLCIFVVVK MGIGYVLQLG LICKEERCSL LHKGRSLGKL  120
LERYQMHSEE EISASKNAGG TDKKHNAECS DLRAGASLSL KMSQSGMEAQ DLDNLDVPEL  180
TQLEKELDAL LRQTRSRKTQ LMMETRTALI ETLSDHLITE KQLKEEKRLI ENEKLTILRK  240
RRKGRDGGDN GGKHRCFGPC QKISLQEQRE STSWQEGSWI MYECSLKDYP YLLLAMMVMS  300
CQLRKSDRTT EKRQGKFKAT VVASAGGDCD DTAAQLRAKK KIPRKTDDKL VAADSISTPD  360
SMSLHDVMDD PYSFINRIDV QHHSSFFHFF DLQKTLRTSH YSLDSITN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.34e-28MIKC_MADS family protein