PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP006104.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GeBP

Protein Properties

Length: 386aa MW: 42097.3 Da PI: 8.819

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP006104.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	119.5	1.8e-37	159	252	1	98
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 klfqr+ws+eDei++L+G++d+++k+g++p++d+ af+ef+kks++++v+k+ql +KirrLKkK+ ++vkk k+++ +k+hdqk+f+lskk+Wgs PCP006104.1 159 KLFQRIWSDEDEIIILKGMVDYTTKKGADPYSDMGAFHEFIKKSLKVDVNKNQLQDKIRRLKKKYATNVKK----KKFNPTKAHDQKVFDLSKKVWGS 252 579******************************************************************....89999**************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MAPKRPSPLD EPPAASSAED EEVSSEEEGE EEESGSGSDS EPEEPLPSKI SSSAPVSEKK 60 PPSKKPDSSA ANSKPESSSS GSEADSDSDV DKDLVVKPIA SKPMEETPKT KKPRSRPAAT 120 ATPVVKSGSK RPSETEPKDS KRLKKKEPDQ LEEEAKKSKL FQRIWSDEDE IIILKGMVDY 180 TTKKGADPYS DMGAFHEFIK KSLKVDVNKN QLQDKIRRLK KKYATNVKKK KFNPTKAHDQ 240 KVFDLSKKVW GSSSSGEGSS GVSGLSEQSK SNGKARNTKT LASIRANSLS SPEPPKEAVK 300 VDLGLNPCSS ESLSEVIGFD KGFGELGLPE GLVKQGLELI GGPKRAELKE KWRKLHVAEL 360 ELFVKRSELM RDQTKVILEA LNSSDH

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MAPKRPSPLD EPPAASSAED EEVSSEEEGE EEESGSGSDS EPEEPLPSKI SSSAPVSEKK  60
PPSKKPDSSA ANSKPESSSS GSEADSDSDV DKDLVVKPIA SKPMEETPKT KKPRSRPAAT  120
ATPVVKSGSK RPSETEPKDS KRLKKKEPDQ LEEEAKKSKL FQRIWSDEDE IIILKGMVDY  180
TTKKGADPYS DMGAFHEFIK KSLKVDVNKN QLQDKIRRLK KKYATNVKKK KFNPTKAHDQ  240
KVFDLSKKVW GSSSSGEGSS GVSGLSEQSK SNGKARNTKT LASIRANSLS SPEPPKEAVK  300
VDLGLNPCSS ESLSEVIGFD KGFGELGLPE GLVKQGLELI GGPKRAELKE KWRKLHVAEL  360
ELFVKRSELM RDQTKVILEA LNSSDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	230	RRLKKKYATNVKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	6e-28	GeBP family protein