PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP006055.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family NF-YA
Protein Properties Length: 333aa    MW: 36066.4 Da    PI: 9.9011
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP006055.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.71.1e-29132187258
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   p+YVNaKQy++I++RRq+Rak+  e++  ++ rkpy+heSRh+hA+rRpRg+gGrF
  PCP006055.1 132 GPIYVNAKQYHGIMRRRQSRAKAVIENRA-ARLRKPYMHESRHRHAMRRPRGCGGRF 187
                  69***************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MAMQTVYFKG HEGIAPNPIG QFSSSLSGPW WSSLGSQPVY GESCGLSKPS TKEQPNTGDH  60
FTATKLAGRG TEQGLEKGNT NQFTIFPGDG QKSQAAISLQ SSPGKYHGHF ELGFSQPVGR  120
IMLPLNLTED EGPIYVNAKQ YHGIMRRRQS RAKAVIENRA ARLRKPYMHE SRHRHAMRRP  180
RGCGGRFLNT KTMNNGDKGT EGKQVGDGQL FRLSGSQSSE VWQSDSGTLN SSRETNGSIS  240
NISGSEQEIT AATSMFDSKG KDGVGANSVA STPSTPQPDG EALLQFLLRL LQQAFGSRIV  300
LPPFGCCQKA NHSWLMLAEK FSCRSMQSSC SGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172181RHRHAMRRPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.22e-43NF-YA family protein