PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP006009.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 323aa    MW: 35385.8 Da    PI: 7.7146
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP006009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.9e-1260104147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +W++ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
      PCP006009.1  60 RESWSEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 104
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MVSKNPNPPE GLYLDPNDNG MPLPGLGPFA SVTATTSTTS SSAEDLSKKI RKPYTITKSR  60
ESWSEPEHDK FLEALQLFDR DWKKIEAFIG SKTVIQIRSH AQKYFLKVQK NGTSEHLPPP  120
RPKRKAAHPY PQKASKNALA LPPVSWSCQS SSALLESGFN QRPDSSSMLM SPIPGPVAPS  180
WPNGSVQTAN PSHESKVVSG PTVPNNSCST TESTPKAQPV GGTTDQVNHS HALRVLPDFT  240
QVYGFIGSVF DPNVTGHLQN LKKMDPIDVE TVLLLMRNLS MNLTNPEFED HRQLLSSYKM  300
DADTGNLSDA TKTLCDDQHE KVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-100MYB_related family protein