PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005843.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 552aa MW: 60814.4 Da PI: 6.5165

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005843.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.2	7.2e-17	183	232	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PCP005843.1 183 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 232 78*****************......55**********************997 PP
2	AP2	41.8	2.7e-13	275	325	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ +Aa+a+++a+ k +g PCP005843.1 275 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIDAARAYDKAAIKCNG 325 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MWDLNDSPDQ RPRGEESEGC SSQKTSADGD EEKGKRVGSV SNSSSSAVVI EEDGSDEEED 60 QDDGPTKLAK KRGGGGGGGG KIFGFSVTHE ESMDSDPPVT VTRQFFPVEQ DDSSSNFDVM 120 GSAAGGGSIP PPPSTSSSFP RAHWVGVNFG QSDSGSPGKP PPTAEASHQP MKKSRRGPRS 180 RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVEADINFT 240 IEDYEEDLKQ MSNLTKEEFV HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY 300 VYLGLFDTEI DAARAYDKAA IKCNGKEAVT NFDPSIYENE PNPSESSGVN AADHDLDLSL 360 GSSNSKKNNQ ALGNDNNSQN AALERQHSVS MQFDADWRSQ GFRPKLNIQR DRSRDDIDAQ 420 RKDGYLESEA MQLLLRTNLQ SQVPAEMHKY GQFSSRRPTA EDIQMPHNFP PHFNSPNYHH 480 IQFPSSSEGG GRIGSDLSLS MSDHHHQWQS ATPTSDLFAT AAASSGFPPQ IRPSSAQNGW 540 LQKNGFHSLT RR

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MWDLNDSPDQ RPRGEESEGC SSQKTSADGD EEKGKRVGSV SNSSSSAVVI EEDGSDEEED  60
QDDGPTKLAK KRGGGGGGGG KIFGFSVTHE ESMDSDPPVT VTRQFFPVEQ DDSSSNFDVM  120
GSAAGGGSIP PPPSTSSSFP RAHWVGVNFG QSDSGSPGKP PPTAEASHQP MKKSRRGPRS  180
RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVEADINFT  240
IEDYEEDLKQ MSNLTKEEFV HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY  300
VYLGLFDTEI DAARAYDKAA IKCNGKEAVT NFDPSIYENE PNPSESSGVN AADHDLDLSL  360
GSSNSKKNNQ ALGNDNNSQN AALERQHSVS MQFDADWRSQ GFRPKLNIQR DRSRDDIDAQ  420
RKDGYLESEA MQLLLRTNLQ SQVPAEMHKY GQFSSRRPTA EDIQMPHNFP PHFNSPNYHH  480
IQFPSSSEGG GRIGSDLSLS MSDHHHQWQS ATPTSDLFAT AAASSGFPPQ IRPSSAQNGW  540
LQKNGFHSLT RR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	81	RGGGGGGGGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-112	AP2 family protein