PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP005825.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 231aa MW: 25787.8 Da PI: 8.6121 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.3 | 5.5e-25 | 19 | 62 | 8 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKAeELS+LC+ evaviifs+tgkl++yss PCP005825.1 19 ARQVTFSKRRRGIFKKAEELSILCESEVAVIIFSQTGKLFDYSS 62 79****************************************96 PP | |||||||
2 | K-box | 46.5 | 1.6e-16 | 86 | 172 | 12 | 98 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ +s +++ +L ke+e r++R+++GedL++L+l +L++Le+ +e s+ ++ ++K++ ++++i l +k el e+n++L+++l PCP005825.1 86 SHPQSEKENTIRLSKELEDKTRKLRQMKGEDLQDLDLDQLNKLEKMVEASVGRVIKTKEKKIMSEIMALTNKGAELIEANNQLKQRL 172 56789999999*************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence |
MVKRMNEKIK IRRIDYLPAR QVTFSKRRRG IFKKAEELSI LCESEVAVII FSQTGKLFDY 60 SSSRYGGLPS PSCKKSVLAA ASFPISHPQS EKENTIRLSK ELEDKTRKLR QMKGEDLQDL 120 DLDQLNKLEK MVEASVGRVI KTKEKKIMSE IMALTNKGAE LIEANNQLKQ RLVMLSARGD 180 IEPAAIMELE NLNNVGEEGM TSESATNVTA CSSSALSLED DCSDILSLKL G |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 2e-47 | MIKC_MADS family protein |