PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005731.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 361aa MW: 40039.3 Da PI: 9.5818

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005731.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65.2	1.4e-20	55	146	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+ +re++ +lrrg+lk+++W++v++++ + ++++qC++k+e+l+kry+ + +++++ s+ +s++++f++++a PCP005731.1 55 CWSHDETVALIDSYREKWYSLRRGNLKATHWQDVADAIaricPAASPAKTAVQCRHKMEKLRKRYRTEIQRARSMpLSRFTSSWVHFKRMDA 146 8*****************************99999876667788899*********************977999********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MASPPSSPQD DSILPLQSEP PQGVPLALPA PPLSQSQQTQ PNPTPPSSRR LPPPCWSHDE 60 TVALIDSYRE KWYSLRRGNL KATHWQDVAD AIARICPAAS PAKTAVQCRH KMEKLRKRYR 120 TEIQRARSMP LSRFTSSWVH FKRMDAMEKG PAAGKRENSE SLGEEEDNEE NEEEEDPDQE 180 LYEELRYGSN MKSMSKLYRN GAGVGGGSGG SGGGGGPGSG FRIRIPTGVS IAQPGTKVYP 240 KMDQKFGMNS NPGSGYGSAK VMRESGNSGR PGLGKRERDG RERERDPVAE MVSAIKLLGD 300 GFVRMEQMKM EMAREIETMR MDMEVKRTEM ILESQQRIVE AFAKAVSEKK KKAKRMPSPE 360 A

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MASPPSSPQD DSILPLQSEP PQGVPLALPA PPLSQSQQTQ PNPTPPSSRR LPPPCWSHDE  60
TVALIDSYRE KWYSLRRGNL KATHWQDVAD AIARICPAAS PAKTAVQCRH KMEKLRKRYR  120
TEIQRARSMP LSRFTSSWVH FKRMDAMEKG PAAGKRENSE SLGEEEDNEE NEEEEDPDQE  180
LYEELRYGSN MKSMSKLYRN GAGVGGGSGG SGGGGGPGSG FRIRIPTGVS IAQPGTKVYP  240
KMDQKFGMNS NPGSGYGSAK VMRESGNSGR PGLGKRERDG RERERDPVAE MVSAIKLLGD  300
GFVRMEQMKM EMAREIETMR MDMEVKRTEM ILESQQRIVE AFAKAVSEKK KKAKRMPSPE  360
A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	6e-75	Trihelix family protein