PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005676.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

M-type_MADS

Protein Properties

Length: 1081aa MW: 122058 Da PI: 8.3372

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005676.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.3	2.3e-19	11	63	3	50
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.....EEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.....klyeys 50 i n++ r++tf kR +gilKKA E+S+LCd +v++ii+++++ +l++++ PCP005676.1 11 ITNERARKTTFQKRTKGILKKAGEISTLCDLDVCMIIYGPKQsgrspELHTWP 63 89*************************************98744444577776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1081 aa Download sequence
MGRGRLNMEL ITNERARKTT FQKRTKGILK KAGEISTLCD LDVCMIIYGP KQSGRSPELH 60 TWPRNPSEVN RIINKYKAST TCKPAKKTFN LSDLLMDRKT KVHVDTYRAR KEMYEAKYPT 120 WDERIENFSE NELELLLNAL DAKLEAGKRT LLHKRNRPAE HQYICSSTQK QPCNYYKPDQ 180 NNNNVEDKNP MTSCSWNRSN MDMVETLQPF PVSSFDHHHQ QQHPSDQMLR FDNSNEYANS 240 VLAPNNNLGP LAMWMLMESK YNHSSLQLTG GASGCNSQLP FEGRHHSNFN NPMMIQSTVE 300 NMNMNMNMMR QEYYSARLMQ QPAVPYLQYP VLPASVSSSH QVHQVQASHQ VVRDDDQYED 360 ISQFNLGSYW DFTVDFDNLH AVITCMHPRI LGSKLLGDEF NWTKKKKKKM VGSTDGVTDK 420 VYSNGLFHHS SDSVEQKLDE LRRLMGKAEG DPLRIVGVGA GAWGSVFVAM LQDSYGHLRD 480 KVLIRIWRRP GRLVDRATAE HLFEVINSRE DVLRRLIRRC AYLKYVEARL GDRTLFADEL 540 LKDGFCVNMI DTPLCPMKVV TNLQEAVWDA DIVVNGLPST ETHVVFEEIS RYWKERVTMP 600 VIISLSKGVE AELEPEPRII TPTQIINRAT GVPNENILYL GGPNIASEIY NNEYANARIC 660 GADKWRKPLA KFLRQPHFIV WDNGDLVTHE VMGGLKNVYA IGAEEPEKLA GPLLADTYVT 720 LLKGRNAWYG QKLAKGELNL EMGDSIKGKG MIQGVSAVKA FFELLSQPSL SILHPDEKKP 780 VAPVELCPIL KMLYRILITR EFPSQAILQA LRDETMNDPR DRIAIAQTHA FYRPSLLDDD 840 VSEEEVRENK ENEPQQQLPS DDPRPQTQLV VSSYQQPESS APSSAPSIQQ LPDASMLLNS 900 PVSSSNMLSG GDHSSRVAAA MVESSSRKRE NAFASSVPRN KVPRGNLPHS RNVPDTVGGL 960 LVPPQLRGRI LIGKLLSSLS SSVQGQMSQN TESGNTQRKN VPNTEFGKEE RLPIKKDAPY 1020 TDSGNMERLP IGNDVRNRDF RNTETPSKRT NISITGNTET PSKRTNISIT GNGDLAQNRA 1080 R

Sequence ? help Back to Top

Protein Sequence Length: 1081 aa Download sequence

MGRGRLNMEL ITNERARKTT FQKRTKGILK KAGEISTLCD LDVCMIIYGP KQSGRSPELH  60
TWPRNPSEVN RIINKYKAST TCKPAKKTFN LSDLLMDRKT KVHVDTYRAR KEMYEAKYPT  120
WDERIENFSE NELELLLNAL DAKLEAGKRT LLHKRNRPAE HQYICSSTQK QPCNYYKPDQ  180
NNNNVEDKNP MTSCSWNRSN MDMVETLQPF PVSSFDHHHQ QQHPSDQMLR FDNSNEYANS  240
VLAPNNNLGP LAMWMLMESK YNHSSLQLTG GASGCNSQLP FEGRHHSNFN NPMMIQSTVE  300
NMNMNMNMMR QEYYSARLMQ QPAVPYLQYP VLPASVSSSH QVHQVQASHQ VVRDDDQYED  360
ISQFNLGSYW DFTVDFDNLH AVITCMHPRI LGSKLLGDEF NWTKKKKKKM VGSTDGVTDK  420
VYSNGLFHHS SDSVEQKLDE LRRLMGKAEG DPLRIVGVGA GAWGSVFVAM LQDSYGHLRD  480
KVLIRIWRRP GRLVDRATAE HLFEVINSRE DVLRRLIRRC AYLKYVEARL GDRTLFADEL  540
LKDGFCVNMI DTPLCPMKVV TNLQEAVWDA DIVVNGLPST ETHVVFEEIS RYWKERVTMP  600
VIISLSKGVE AELEPEPRII TPTQIINRAT GVPNENILYL GGPNIASEIY NNEYANARIC  660
GADKWRKPLA KFLRQPHFIV WDNGDLVTHE VMGGLKNVYA IGAEEPEKLA GPLLADTYVT  720
LLKGRNAWYG QKLAKGELNL EMGDSIKGKG MIQGVSAVKA FFELLSQPSL SILHPDEKKP  780
VAPVELCPIL KMLYRILITR EFPSQAILQA LRDETMNDPR DRIAIAQTHA FYRPSLLDDD  840
VSEEEVRENK ENEPQQQLPS DDPRPQTQLV VSSYQQPESS APSSAPSIQQ LPDASMLLNS  900
PVSSSNMLSG GDHSSRVAAA MVESSSRKRE NAFASSVPRN KVPRGNLPHS RNVPDTVGGL  960
LVPPQLRGRI LIGKLLSSLS SSVQGQMSQN TESGNTQRKN VPNTEFGKEE RLPIKKDAPY  1020
TDSGNMERLP IGNDVRNRDF RNTETPSKRT NISITGNTET PSKRTNISIT GNGDLAQNRA  1080
R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	5e-23	M-type_MADS family protein