PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005667.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 311aa MW: 34793.1 Da PI: 8.0151

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005667.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.7e-19	145	199	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k PCP005667.1 145 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRSRQVEVWFQNRRARTK 199 788899***********************************************98 PP
2	HD-ZIP_I/II	124.9	3.8e-40	145	234	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+e+n+rL+kev+eLr +l PCP005667.1 145 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRSRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTERNRRLQKEVQELR-AL 234 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MMVEREDLGL SLSLNFPHTH NNQSSSRFQL NLMPSLLPTS ASASSSPSGF LPQKPLWNDP 60 LPSSDLNSNS ETCRGGPRSF LRGIDVNQLP PTGDCEEEAG VSSPNSTVST VSGKRSERDT 120 NGEDLDLERD CSRGLSDEED GETSRKKLRL SKDQSAILEE SFKEHNTLNP KQKLALAKQL 180 GLRSRQVEVW FQNRRARTKL KQTEVDCEFL KRCCENLTER NRRLQKEVQE LRALKLSPQF 240 YMQMTPPTTL TMCPSCERVG VPPNSSSSAA VPRPHSQMGP VQPHPLPINP WPSATTVPHR 300 PLPFDIFHPR S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	150	SRKKLRL
2	194	202	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	2e-93	HD-ZIP family protein