PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005566.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-YB

Protein Properties

Length: 590aa MW: 65559.9 Da PI: 6.7239

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005566.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.3	2e-18	226	287	24	86
trihelix 24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 g k+ Wee+s km e g+ rs +C+ekwen+nk+++++ ++kr s + + cpyf++le PCP005566.1 226 GTPKGRIWEEISVKMGEMGYVRSGRKCREKWENINKYFRRCMGPDSKR-SANAKLCPYFHELE 287 6789999*************************************98.67778*****97 PP
2	NF-YB	172.8	3.6e-54	385	481	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++yl++yre+ege+ PCP005566.1 385 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYREMEGER 481 59*********************************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence
MAELTGGRHL PNSDAFGEQI SPFPESTYDL VFENPTPAVP SPPQKLRPVR GGGGRSPMDS 60 GGKLEDVGPA KVGSGDELED ESSSSADDDD DRDKCLKAQG EEPMKRKRKT NVRTGNRLEI 120 ERVELFLESL VKKVMEQQEQ MHKQLIEVIE KNEKERLARE EAWKQQVLDR LKRDKEIRAQ 180 ETSRSLALIS FIQNYLGSEN QVPQPSPSPS PEMGRQTMAC RRPDVGTPKG RIWEEISVKM 240 GEMGYVRSGR KCREKWENIN KYFRRCMGPD SKRSANAKLC PYFHELELLH KSGLVSFGNG 300 FNRTSNQNEA KIEKEEQKSE KRSDDGLKPS DINLRQAEMN QYSMGMGRQT TATSNVNNVF 360 NNNNVNHPSN ANTTNGTADD NECMVREQDR FMPIANVIRI MRKILPPHAK ISDDAKETIQ 420 ECVSEYISFI TGEANERCQR EQRKTITAED VLWAMSKLGF DDYIEPLTLY LHRYREMEGE 480 RGSSTTSLMR SESLAKGAGT SSGTSSRSMD HHQYYGTSMA AAAAAFHHQH GHGLFGYMQP 540 SDVSVSNNNA NAAAASGSSS QLQGGGSAAM PNGDHHQPHA NGANGPSGGV

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence

MAELTGGRHL PNSDAFGEQI SPFPESTYDL VFENPTPAVP SPPQKLRPVR GGGGRSPMDS  60
GGKLEDVGPA KVGSGDELED ESSSSADDDD DRDKCLKAQG EEPMKRKRKT NVRTGNRLEI  120
ERVELFLESL VKKVMEQQEQ MHKQLIEVIE KNEKERLARE EAWKQQVLDR LKRDKEIRAQ  180
ETSRSLALIS FIQNYLGSEN QVPQPSPSPS PEMGRQTMAC RRPDVGTPKG RIWEEISVKM  240
GEMGYVRSGR KCREKWENIN KYFRRCMGPD SKRSANAKLC PYFHELELLH KSGLVSFGNG  300
FNRTSNQNEA KIEKEEQKSE KRSDDGLKPS DINLRQAEMN QYSMGMGRQT TATSNVNNVF  360
NNNNVNHPSN ANTTNGTADD NECMVREQDR FMPIANVIRI MRKILPPHAK ISDDAKETIQ  420
ECVSEYISFI TGEANERCQR EQRKTITAED VLWAMSKLGF DDYIEPLTLY LHRYREMEGE  480
RGSSTTSLMR SESLAKGAGT SSGTSSRSMD HHQYYGTSMA AAAAAFHHQH GHGLFGYMQP  540
SDVSVSNNNA NAAAASGSSS QLQGGGSAAM PNGDHHQPHA NGANGPSGGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	2e-66	NF-YB family protein