PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005533.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CO-like

Protein Properties

Length: 358aa MW: 39574.1 Da PI: 6.1859

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005533.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.1	1.3e-06	18	59	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+++ + +C+ ++ +lC C ++H H++ PCP005533.1 18 RVCDTCRAAACTVYCRADSAYLCSGCDATIHAAnrlasrHER 59 79****99*******************55667777775 PP
2	zf-B_box	29.7	1.4e-09	60	105	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC C +H+ H++vp+ PCP005533.1 60 VWVCEACERAPAAFLCKADAASLCTACDADIHSAnplarrHQRVPI 105 689***************************668999999997 PP
3	CCT	69.9	6.3e-24	289	332	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ PCP005533.1 289 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 332 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MLKEDQSSGT ATANNWARVC DTCRAAACTV YCRADSAYLC SGCDATIHAA NRLASRHERV 60 WVCEACERAP AAFLCKADAA SLCTACDADI HSANPLARRH QRVPILPISG CLYSSQATEQ 120 GGMGVVVSAG AETEDGFLSQ EGDDTIDEED EDEAASWLLL NPNNQFTDHH QQHDQQEQQQ 180 YGVQYKNYGG DSVVPVHQHG EVGKAHQMQQ LQKQSFHQLG LEYESSKAAY SYNGSLSHSV 240 SVSSMDVGVV PDSTMSDISI SHPRTPKGTI DLFSGPTIQM PTQLSPMDRE ARVLRYREKK 300 KTRKFEKTIR YASRKAYAET RPRIKGRFAK RTEMEVEVDQ MFATSLMAEN GYGIVPSF

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MLKEDQSSGT ATANNWARVC DTCRAAACTV YCRADSAYLC SGCDATIHAA NRLASRHERV  60
WVCEACERAP AAFLCKADAA SLCTACDADI HSANPLARRH QRVPILPISG CLYSSQATEQ  120
GGMGVVVSAG AETEDGFLSQ EGDDTIDEED EDEAASWLLL NPNNQFTDHH QQHDQQEQQQ  180
YGVQYKNYGG DSVVPVHQHG EVGKAHQMQQ LQKQSFHQLG LEYESSKAAY SYNGSLSHSV  240
SVSSMDVGVV PDSTMSDISI SHPRTPKGTI DLFSGPTIQM PTQLSPMDRE ARVLRYREKK  300
KTRKFEKTIR YASRKAYAET RPRIKGRFAK RTEMEVEVDQ MFATSLMAEN GYGIVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-105	CO-like family protein