PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005486.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARF

Protein Properties

Length: 1055aa MW: 115125 Da PI: 6.5369

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005486.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	260	361	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ + PCP005486.1 260 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 353 99***************************8544444..48********************************************..889999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++r+ PCP005486.1 354 LLLGIRRA 361 9**997 PP
2	Auxin_resp	119.7	2.2e-39	386	469	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k PCP005486.1 386 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 469 79*******************************9789****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1055 aa Download sequence
MKGVVIAAVV VVLAMLVFAE PGHATVTCQQ AVSSVTPCLQ YLTSGSGTPP VACCSGVSGL 60 RQLTQTTEDR RTACQCLMDA ANQNQDIKEA AAAGLPAACR GVAIAAVVVV VAVLAMLALV 120 ELGKAEVLGV EAVTVSSCIP YFTHGTGEKK CLNSELWHAC AGPLVSLPLL GSRVVYFPQG 180 HSEQVAASTN KEVDAHFPNY PNLPPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNPQEQK 240 DVYLLPAELG AASKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD YSQQPPAQEL 300 IARDLHDNEW KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWNE KNQLLLGIRR 360 ANRPQTVMPS SVLSSDSMHI GLLAAAAHAA ATNSRFTIFY NPRASPSEFV IPLAKYVKAV 420 YHTRVSVGMR FRMLFETEES SVRRYMGTIT GISDLDSVRW PNSHWRSVKV GWDESTAGER 480 QPRVSLWEIE PLTTFPMYPS PFPLRLKRPW ASGVPSFHGL KDGDMGINSP LMWLQGGLGD 540 QGMQSLNFQG FGVSPWMQPR LDVSMAGLQP DVYQAMAAAA LQEMRAVDSS KCSSQSLLPF 600 QQSSSVSNGA AAVLQRQVLP QSQSQNAFLQ SFQENQAPAQ AQVLQQQSQR YHPYSDQRQQ 660 QLQQQQQHQH HHQQQQQQQL NQQQQLNQLQ QSRHMQQLSV QQQIPNAVSA LPNFASITPS 720 QSASMQSISS QSQQQSFPDP VGNPIPSSDV PPIHSILGSL SQDGTSHLLH LSGSNSAISS 780 SLLSKQTTGE PQLSSGAAQC VLPQVEQLRT PQSSFSEITA LPPFPGREYS AFQGGTDPQS 840 NLLFGVNIDS SSLMLHNGIP NLRNIGNGND SVSVPFGASN YASGTGNDFP LNSDMTTSSC 900 VDESGFLQSS ENVDQVNPTG TFVKVHKLGS FGRSLDISKF SSYDDLRSEL ARMFGLEGQL 960 EDPQRSGWQL VFVDRENDVL LLGDDPWQEF VNNVYYIKIL SPLEVQQMGR EGLNSVASVP 1020 NNKLSNGSNT TVDYVGRQDL RNSRNGIASL GSLDY

Sequence ? help Back to Top

Protein Sequence Length: 1055 aa Download sequence

MKGVVIAAVV VVLAMLVFAE PGHATVTCQQ AVSSVTPCLQ YLTSGSGTPP VACCSGVSGL  60
RQLTQTTEDR RTACQCLMDA ANQNQDIKEA AAAGLPAACR GVAIAAVVVV VAVLAMLALV  120
ELGKAEVLGV EAVTVSSCIP YFTHGTGEKK CLNSELWHAC AGPLVSLPLL GSRVVYFPQG  180
HSEQVAASTN KEVDAHFPNY PNLPPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNPQEQK  240
DVYLLPAELG AASKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD YSQQPPAQEL  300
IARDLHDNEW KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWNE KNQLLLGIRR  360
ANRPQTVMPS SVLSSDSMHI GLLAAAAHAA ATNSRFTIFY NPRASPSEFV IPLAKYVKAV  420
YHTRVSVGMR FRMLFETEES SVRRYMGTIT GISDLDSVRW PNSHWRSVKV GWDESTAGER  480
QPRVSLWEIE PLTTFPMYPS PFPLRLKRPW ASGVPSFHGL KDGDMGINSP LMWLQGGLGD  540
QGMQSLNFQG FGVSPWMQPR LDVSMAGLQP DVYQAMAAAA LQEMRAVDSS KCSSQSLLPF  600
QQSSSVSNGA AAVLQRQVLP QSQSQNAFLQ SFQENQAPAQ AQVLQQQSQR YHPYSDQRQQ  660
QLQQQQQHQH HHQQQQQQQL NQQQQLNQLQ QSRHMQQLSV QQQIPNAVSA LPNFASITPS  720
QSASMQSISS QSQQQSFPDP VGNPIPSSDV PPIHSILGSL SQDGTSHLLH LSGSNSAISS  780
SLLSKQTTGE PQLSSGAAQC VLPQVEQLRT PQSSFSEITA LPPFPGREYS AFQGGTDPQS  840
NLLFGVNIDS SSLMLHNGIP NLRNIGNGND SVSVPFGASN YASGTGNDFP LNSDMTTSSC  900
VDESGFLQSS ENVDQVNPTG TFVKVHKLGS FGRSLDISKF SSYDDLRSEL ARMFGLEGQL  960
EDPQRSGWQL VFVDRENDVL LLGDDPWQEF VNNVYYIKIL SPLEVQQMGR EGLNSVASVP  1020
NNKLSNGSNT TVDYVGRQDL RNSRNGIASL GSLDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.2	0.0	ARF family protein