PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP005466.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 851aa    MW: 93137.1 Da    PI: 6.3126
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP005466.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182482357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PCP005466.1 24 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 82
                 6789*****************************************************97 PP
2START170.11.4e-531733792203
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  e+l  i  g  g+++l +++
  PCP005466.1 173 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRRSWFRDCRCLEVLSLIPAGngGTIELVYMQ 269
                  68999*****************************************************.9999999999****************9999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l++ Rdf+++Ry+ +l++g++v++++S++s +  p+   s+s+vRae+lpSg+li+p+++g+s + +v+hvdl++++++++lrsl++s+ + 
  PCP005466.1 270 TYAPTTLAAaRDFWTLRYTTSLEDGSLVVCERSLTSSTGGPQgptSASFVRAEMLPSGYLIRPCEGGGSIINIVDHVDLDAWSVPEVLRSLYESSKIL 367
                  *************************************99999999***************************************************** PP

                  HHHHHHHHTXXX CS
        START 192 gaktwvatlqrq 203
                  ++kt+ ++l++ 
  PCP005466.1 368 AQKTTISALRHI 379
                  *******99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    
MALVMHRDSP GSSSGGRQQM DSSKYVRYTP EQVEALERVY SECPKPSSLR RQQLIRECPI  60
LSNIEPKQIK VWFQNRRCRE KQRKESSRLQ TVNRKLTAMN KLLMEENDRL QKQVSHLVYE  120
NGFMKQQLHT ASGTTTDNSC ESVVMSGQHQ QQQNPTPQHP QRDANNPAGL LAIAEETLAE  180
FLSKATGTAV DWVQMIGMKP GPDSIGIVAV SRNCSGVAAR ACGLVSLEPT KVAEILKDRR  240
SWFRDCRCLE VLSLIPAGNG GTIELVYMQT YAPTTLAAAR DFWTLRYTTS LEDGSLVVCE  300
RSLTSSTGGP QGPTSASFVR AEMLPSGYLI RPCEGGGSII NIVDHVDLDA WSVPEVLRSL  360
YESSKILAQK TTISALRHIR QIAQESSGEI QHGGGRQPAV LRTFCQRLCS GFNDAVNGFA  420
DDGWTLMGSD GVEDVTIAIN SSPKVLGSQY NTSIFPPFGG GVLCAKASML LQSVPPALLV  480
RFLREHRSEW ADYGVDAYSA ACLKASPYAV PLARGGGFPS TQNILPLAQT VEHEEFLEVV  540
RLEGPAFSPE DVALTRDMYL LQLCSGVDEN AVAACAQLVF APIDESFADD APLLPSGFHV  600
IPLDPKADGP TATRTLDLAS TLEVGTSGAR AINDADGNSY NRRSVLTIAF QFTFENHLRD  660
NVAAMARQYV RSVVSSVQRV AMAIAPSPLS SQIGPKPLPG CPEAHTLARW IFRSFRIHTG  720
GELFRVDISS SDAILKQLWR HSDAIMCCSV KTNTSPVFTF ANQAGLDMLE TTLVALQDIM  780
LDKILDEAGR KILCSEFSKI MQQGFAYLPA GICASSMGRP VSYDQAVAWK VVDDDESNHC  840
LALMFMNWSF M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein