PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP005280.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 336aa    MW: 37703.4 Da    PI: 8.4357
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP005280.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.22.3e-51141391128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrF Ptdeel+v+yL++kv+g +++l ++i+e+d+yk++Pw Lp+k+  +ekewyfFs+rd+ky++g+r+nr++ +gyWkatg+dk +++ +g+
  PCP005280.1  14 LPPGFRFYPTDEELLVQYLCRKVAGYQFNL-QIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGTGYWKATGTDKIITT-EGK 109
                  79****************************.89***************7777799***********************************9999.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +vg+kk Lvfy g+apkg kt+W+mheyrl
  PCP005280.1 110 KVGIKKALVFYVGKAPKGIKTNWIMHEYRL 139
                  ****************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MGVPETDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGYQ FNLQIIAEID LYKFDPWVLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GTGYWKATGT DKIITTEGKK VGIKKALVFY  120
VGKAPKGIKT NWIMHEYRLI EPSRKNGSSR LDEWVLCRIY KKSTSSAAAA AAQESVTSVS  180
GKEHSNGSSS PCSSQLDDGL EWLPDIDDRF FTLPRINSLK TLQQQDSKLN FQNTGSGNFD  240
WASLAGLNSA PELGLNNQTH QGQGQMNLNY NDNDMFVPSI PSLCHVESRP ERVGKTAEEE  300
VQSGLRTRRV DNSGFIQQNS QNFCNPVRPG GFGLWQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-125NAC family protein