PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005144.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 683aa MW: 75460.2 Da PI: 4.8699

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005144.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44	4.1e-14	454	500	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ PCP005144.1 454 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 500 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence
MAAPPPSSSR LRGMLQASVQ YVQWTYSLFW QICPQQGILV WSDGYYNGAI KTRKTVQPME 60 VSAEEASLQR SQQLRELYDS LSAGETNQPP ARRPCASLSP EDLTESEWFY LMCVSFSFPP 120 GVGLPGKAYA RRQHVWLTGA NEVDSKTFSR AILAKSARIQ TVVCIPLLDG VVEFGTTERV 180 PEDHALVEHV KTFFVDHHHP PPPKPALSEH STSNPATSSD HPHFHSPHLL QTMCTNPPLN 240 AAQEDEEDEE EDDNQEEDDG GDESDSEAET GRNGGAVVPA ANPPQVLAAV AEPSELMQLE 300 MSEDIRLGSP DDASNNLDSD FHLLAVSQSR NPADQQRQAD SYRAESTRRC PSVQEPLSSG 360 LQPPHTGPLA LEELTHDDDT HYSETVSTIL QGQATRWTDS SSTNYTACLT QSAFAKCVPF 420 LHSKYRDENS PKSQEGEGST RLRKGTPQDE LSANHVLAER RRREKLNERF IILRSLVPFV 480 TKMDKASILG DTIEYVKQLR NKIQDLEARN MLMEEDQRSR SSGEMQRSSS CKELRSGLTV 540 VERTQGGPPG SDKRKLRIVE GSGGVAIGKA KVMEDSPPPP PPPPPQPEPS PTPMVTGTSL 600 EVSIIESDGL LELQCPYREG LLLDVMQTLR ELRIETTVVQ SSLNNGFFVA ELRAKVKDNV 660 SGKKVSITEV KRVINQIIPQ SDS

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence

MAAPPPSSSR LRGMLQASVQ YVQWTYSLFW QICPQQGILV WSDGYYNGAI KTRKTVQPME  60
VSAEEASLQR SQQLRELYDS LSAGETNQPP ARRPCASLSP EDLTESEWFY LMCVSFSFPP  120
GVGLPGKAYA RRQHVWLTGA NEVDSKTFSR AILAKSARIQ TVVCIPLLDG VVEFGTTERV  180
PEDHALVEHV KTFFVDHHHP PPPKPALSEH STSNPATSSD HPHFHSPHLL QTMCTNPPLN  240
AAQEDEEDEE EDDNQEEDDG GDESDSEAET GRNGGAVVPA ANPPQVLAAV AEPSELMQLE  300
MSEDIRLGSP DDASNNLDSD FHLLAVSQSR NPADQQRQAD SYRAESTRRC PSVQEPLSSG  360
LQPPHTGPLA LEELTHDDDT HYSETVSTIL QGQATRWTDS SSTNYTACLT QSAFAKCVPF  420
LHSKYRDENS PKSQEGEGST RLRKGTPQDE LSANHVLAER RRREKLNERF IILRSLVPFV  480
TKMDKASILG DTIEYVKQLR NKIQDLEARN MLMEEDQRSR SSGEMQRSSS CKELRSGLTV  540
VERTQGGPPG SDKRKLRIVE GSGGVAIGKA KVMEDSPPPP PPPPPQPEPS PTPMVTGTSL  600
EVSIIESDGL LELQCPYREG LLLDVMQTLR ELRIETTVVQ SSLNNGFFVA ELRAKVKDNV  660
SGKKVSITEV KRVINQIIPQ SDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	459	464	ERRRRE
2	460	465	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-102	bHLH family protein