PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP005120.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 816aa    MW: 89933.7 Da    PI: 6.2901
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP005120.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.8e-23116216198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+kvlt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   +  ++e
  PCP005120.1 116 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFL--RGVNGE 209
                  99****************************9543..445569************************************************..448999 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l+v+v+r
  PCP005120.1 210 LRVGVRR 216
                  9****98 PP
2Auxin_resp100.52.2e-33242321183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha++t++ F v+Y+Pr+  s+F++ ++k+++a+++k+svG Rfkm+fe+ed++err+sGt+vg++d++p +W +SkWrsLk
  PCP005120.1 242 ASHALATQTLFVVYYKPRT--SQFIIGLNKYLEAVNNKFSVGIRFKMRFEGEDVPERRFSGTIVGLEDISP-HWADSKWRSLK 321
                  689***************6..9***********************************************99.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    
MANREGGDLY PELWKACAGP LVDVPRVQER VLYFPQGHME QLEASTPTNQ ELNQGIPQFN  60
LPSKILCRVV NVNLLAEQET DEVYAQITLI PDVNQTEPTS PDPCLTEPQR PAVHSFCKVL  120
TASDTSTHGG FSVLRKHATE CLPPLDMTQA TPTQELVAKD LHGYEWRFKH IFRGQPRRHL  180
LTTGWSTFVT SKRLSAGDSF VFLRGVNGEL RVGVRRLARQ QSSMPSSVIS SQSMHVGVLA  240
TASHALATQT LFVVYYKPRT SQFIIGLNKY LEAVNNKFSV GIRFKMRFEG EDVPERRFSG  300
TIVGLEDISP HWADSKWRSL KVHWDESASI PRPDKVSPWE IEPFVASVPP SLPQPAVVKN  360
KRPRPPTEIP TLDAMSSTAS AMWNSGLSQS HDKSPLSVSA EGKRSESHVG WPHQQADVIS  420
NNSVPRTQTD VGWFSSQAGG SPHMFQETME DSKSVSAWSV FSGYSTPNSS KLKNDSMFDH  480
VEKEKKTETA TSCRIFGIDF TNHSTSSPAM EKGPLQPISG STGTPEGRVS NMLAAESDQK  540
SDLSKTSKEG KPGQLQVSPK ETQSKHSCST SARSRTKVQM QGIAVGRAVD LTTLEGYDQL  600
IDELEEMFDI KGQIRHSNMW QIVFTDNEGD MMLMGDDPWS EFCDMVKRIF ICSSQDVKKI  660
SAGCKLPMSS QEVEGGPVLE PSFFLYAYLF HGAYGQDLLD FVLAGGKHSK GGGMTKGCGS  720
LGCGPLGDSQ ATCLDPLEFL LKSFGVSTHG FNLASKIFDD DQSERYEQGI MDFEVPSSMF  780
APLTMAAVVN LAASIWGLVR FSEEAIIWSG CLCRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361365KRPRP
2705713GGKHSKGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0ARF family protein