PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005043.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 598aa MW: 66249.4 Da PI: 6.6237

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005043.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.8	1.4e-06	305	327	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC f +G C++G++C+F H+ PCP005043.1 305 RLCFKFVSSGSCPRGESCNFQHD 327 566667778*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MAPPKILLSG DISGNLKQLI KRVVSVNKSA AGPFDVLLCV GQFFPDSADQ LDEFNDYIEG 60 RAQIPLPTYF IGDYGVGAAK VLLAATRDAG NQGFKLDGLK ICNNLYWLKG SGKFTLHGLS 120 VAYLSGQQSS DSQQFGTYNQ DDVDVLRAIA EEPGIIDFGI TNRANISDAP PGVSEPFGTD 180 NIVAELVAEI KPRYHIAGTK GVFYAREPYS NVDAVHVTRF LGLAPVGNKD KQKFIHALSP 240 TPASTMSAIE IRAKSTTTTL SPYTYEEKTA HSIEAGKRSS DSISDSQYWR YDVPEKRQKH 300 GDGNRLCFKF VSSGSCPRGE SCNFQHDVDA REQSLRGVCF DFMNKGKCER GPDCKFKHSL 360 QDEGDSNSQP GRGSGNANRN RSTECWFCLS SPKVESHLII SIGEHYYCAL AKGPLVEDHV 420 LLIPIGHSPN TVSLPSECDI ELDKFQNALK KYYNKQGKEV VFFEWASKRT THANLQVVPV 480 PSAKAAALKN IFNLAAERQG FKFTTMKSSN NYDGRTLLGE QFDRNFSFFY VQLPDGTILS 540 HSIEENENFL PQFGRQVMAG LLKKADRDDW KNCTDSKEEE TKMVEDFKSG FGEFDPNK

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MAPPKILLSG DISGNLKQLI KRVVSVNKSA AGPFDVLLCV GQFFPDSADQ LDEFNDYIEG  60
RAQIPLPTYF IGDYGVGAAK VLLAATRDAG NQGFKLDGLK ICNNLYWLKG SGKFTLHGLS  120
VAYLSGQQSS DSQQFGTYNQ DDVDVLRAIA EEPGIIDFGI TNRANISDAP PGVSEPFGTD  180
NIVAELVAEI KPRYHIAGTK GVFYAREPYS NVDAVHVTRF LGLAPVGNKD KQKFIHALSP  240
TPASTMSAIE IRAKSTTTTL SPYTYEEKTA HSIEAGKRSS DSISDSQYWR YDVPEKRQKH  300
GDGNRLCFKF VSSGSCPRGE SCNFQHDVDA REQSLRGVCF DFMNKGKCER GPDCKFKHSL  360
QDEGDSNSQP GRGSGNANRN RSTECWFCLS SPKVESHLII SIGEHYYCAL AKGPLVEDHV  420
LLIPIGHSPN TVSLPSECDI ELDKFQNALK KYYNKQGKEV VFFEWASKRT THANLQVVPV  480
PSAKAAALKN IFNLAAERQG FKFTTMKSSN NYDGRTLLGE QFDRNFSFFY VQLPDGTILS  540
HSIEENENFL PQFGRQVMAG LLKKADRDDW KNCTDSKEEE TKMVEDFKSG FGEFDPNK