PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005004.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-YA

Protein Properties

Length: 1381aa MW: 155078 Da PI: 7.5786

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	98.5	7.2e-31	1226	1282	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl k+rkpylheSRh hA++R RgsgGrF PCP005004.1 1226 DGPIYVNAKQYHGILRRRQSRAKLEARNKL-LKARKPYLHESRHLHAVNRVRGSGGRF 1282 57**************************.************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1381 aa Download sequence
MSFLRRRKGK AASDSEPPSP PIGDESEKER EPQTQKGQQQ KHTHKKNGGE KQQRWSCVDS 60 CCWFIGFICS IWWFLLFLYN AMPASFPQYV TEAITGPMTD PPGVKLRKEG LTVKHPVVFV 120 PGIVTGGLEL WEGHSCADGL FRKRLWGGTF GEVYKRPLCW VEHMSLDNET GLDPPGIRVR 180 PVSGLVAADY FAPGYFVWAV LIANLARIGY EEKTMHMASY DWRLSFQNTE VRDQTLSRIK 240 SNIELMVATN GGNKVVVIPH SMGVLYFLHF MKWVEAPGPM GGGGGSDWCA KHIKAVMNIG 300 GPFLGVPKAI AGIFSMEARD IAVARAFAPG VLDKDVFGLQ TLQHMMRMTR TWDATMSMIP 360 KGGDTIWGGL DWSPEGYCNC SAKKVKNNDT NGAVEKRVNY GRIVSFGKDV AEADSSKIEM 420 IDFRDAVKGN YLANATQCDV WTEYHEMGVG GVKAVADYKV YTAGSILDLF HFVAPKLMAR 480 GDNHFSYGIA DNLDDPKYEH YKYWSNPLET KLPNAPDMEI YSMYGVGIPT ERAYVYKLTP 540 SAECYIPFQI DTSAEGGSED PCLKGGIYST DGDETVPVLS AGFMCAKGWR GKTRFNPAGI 600 PTYIREYDHA PPANLLEGRG TQSGAHVDIM GNFALIEDVL RVAAGATGEE LGGDKVHSDI 660 FKCCRLVSKE WYHATYDSFK LFCEKTNTTY GFFLQSKFYP NRVCTFLPVE DNIDNSKTIS 720 LRFLHFPYSI EAADRGLLVG VSHKNHKIPR YFVCAPTAQY WKQIPNPKTR YFTRGTAVTV 780 LRSSSNSNPV LSSWFKIIRL SKPETNPSYE DHSICEVFDS NTWSWKQLND VILPHLVFLD 840 TKSPVSACCA LYWHLTNNQI LAFYQDKETW ETFALPHPMC NDVHWKYSLT AYQGRLALVR 900 KGGDEFMEYW IMEDHREKIW SERKRLSTRG TSVVAFCDSD VALVKEYGKM IFYNFKECKE 960 KILNEEFMEL RVIREHDEKI WSENEKLPCI KTLNNDQMEM EYSFRVVCNG DVALVLETSD 1020 KKAAFCVIFK SWQRASEDGK VEKLSPLPVS GLYLFWDTTI ELSIPTTQKL DKNIFNQSSV 1080 AMPLYTNSMS WNPSEQVPQL LSKDVSFKVK FPPQVHHGAK HLGLQLQTDH GSSSITQSIG 1140 HSQDPSNSSD SGEVQTCDKD AEGNMKPVLL QSNQDFILNP SQGCVPYPYV DPYFGGFLTA 1200 YGPQAMSHMV GMAPTRVLLP PDLAQDGPIY VNAKQYHGIL RRRQSRAKLE ARNKLLKARK 1260 PYLHESRHLH AVNRVRGSGG RFLSTKRQSD QNPSSNTHHV SDSISSHQKD TGGTEGNHSG 1320 SSDFLPSVAL HSDMTSVSNT NDNFQQPDRR FSGIPPHMTG AMQFPGGFMR AGNQHCASVV 1380 R

Sequence ? help Back to Top

Protein Sequence Length: 1381 aa Download sequence

MSFLRRRKGK AASDSEPPSP PIGDESEKER EPQTQKGQQQ KHTHKKNGGE KQQRWSCVDS  60
CCWFIGFICS IWWFLLFLYN AMPASFPQYV TEAITGPMTD PPGVKLRKEG LTVKHPVVFV  120
PGIVTGGLEL WEGHSCADGL FRKRLWGGTF GEVYKRPLCW VEHMSLDNET GLDPPGIRVR  180
PVSGLVAADY FAPGYFVWAV LIANLARIGY EEKTMHMASY DWRLSFQNTE VRDQTLSRIK  240
SNIELMVATN GGNKVVVIPH SMGVLYFLHF MKWVEAPGPM GGGGGSDWCA KHIKAVMNIG  300
GPFLGVPKAI AGIFSMEARD IAVARAFAPG VLDKDVFGLQ TLQHMMRMTR TWDATMSMIP  360
KGGDTIWGGL DWSPEGYCNC SAKKVKNNDT NGAVEKRVNY GRIVSFGKDV AEADSSKIEM  420
IDFRDAVKGN YLANATQCDV WTEYHEMGVG GVKAVADYKV YTAGSILDLF HFVAPKLMAR  480
GDNHFSYGIA DNLDDPKYEH YKYWSNPLET KLPNAPDMEI YSMYGVGIPT ERAYVYKLTP  540
SAECYIPFQI DTSAEGGSED PCLKGGIYST DGDETVPVLS AGFMCAKGWR GKTRFNPAGI  600
PTYIREYDHA PPANLLEGRG TQSGAHVDIM GNFALIEDVL RVAAGATGEE LGGDKVHSDI  660
FKCCRLVSKE WYHATYDSFK LFCEKTNTTY GFFLQSKFYP NRVCTFLPVE DNIDNSKTIS  720
LRFLHFPYSI EAADRGLLVG VSHKNHKIPR YFVCAPTAQY WKQIPNPKTR YFTRGTAVTV  780
LRSSSNSNPV LSSWFKIIRL SKPETNPSYE DHSICEVFDS NTWSWKQLND VILPHLVFLD  840
TKSPVSACCA LYWHLTNNQI LAFYQDKETW ETFALPHPMC NDVHWKYSLT AYQGRLALVR  900
KGGDEFMEYW IMEDHREKIW SERKRLSTRG TSVVAFCDSD VALVKEYGKM IFYNFKECKE  960
KILNEEFMEL RVIREHDEKI WSENEKLPCI KTLNNDQMEM EYSFRVVCNG DVALVLETSD  1020
KKAAFCVIFK SWQRASEDGK VEKLSPLPVS GLYLFWDTTI ELSIPTTQKL DKNIFNQSSV  1080
AMPLYTNSMS WNPSEQVPQL LSKDVSFKVK FPPQVHHGAK HLGLQLQTDH GSSSITQSIG  1140
HSQDPSNSSD SGEVQTCDKD AEGNMKPVLL QSNQDFILNP SQGCVPYPYV DPYFGGFLTA  1200
YGPQAMSHMV GMAPTRVLLP PDLAQDGPIY VNAKQYHGIL RRRQSRAKLE ARNKLLKARK  1260
PYLHESRHLH AVNRVRGSGG RFLSTKRQSD QNPSSNTHHV SDSISSHQKD TGGTEGNHSG  1320
SSDFLPSVAL HSDMTSVSNT NDNFQQPDRR FSGIPPHMTG AMQFPGGFMR AGNQHCASVV  1380
R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	3e-40	NF-YA family protein