PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP004822.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 235aa MW: 26422.8 Da PI: 4.8355 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 55.4 | 1.6e-17 | 2 | 46 | 42 | 87 |
trihelix 42 gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a PCP004822.1 2 GYKRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 46 9****************************8.99999********85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence |
MGYKRSSKRC KEKWENINKY FKKVKESNKK RPEDAKTCPY FHELDALYRK RVLGGGSSGG 60 SSSSLGNRLE QQPQQQENPK SGSSTHPQPS AHTVSQTQGQ VVAAGSENKD ADHSTSVETN 120 LRANLFGEGK EEAAKKPEDI VKELMEVHDH HQQVFQGLPQ HLVVEDYNRM EEADSDNLMD 180 QEEEDMEDDD IDDEGDEETE QERKMAYKIE FQKQNTGRSS NGGGNGAPSF LAMVQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 4e-27 | Trihelix family protein |