PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP004632.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 762aa    MW: 84686.9 Da    PI: 6.5193
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP004632.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.3e-21109164156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  PCP004632.1 109 RKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 164
                  7999************************************************9877 PP
2START224.43.4e-702785012206
                  HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  + ++a++el k+a+a+ep+Wv+s+    e++n+de++++f  +        +s+ea+r++gvv+ +l +lv +++d++ qW+e+++    ka+t++vi
  PCP004632.1 278 IVNQAMEELKKMATAGEPLWVRSVetgrEILNYDEYIKEFNIEVPgnarpkRSIEASRETGVVFVDLLRLVHSFMDVN-QWKEMFPcmisKAATVDVI 374
                  56789***********************************87544999******************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  ++g      g++qlm+aelq+l+plvp R+++fvR+++ql+ ++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kv+wveh ++++++
  PCP004632.1 375 NNGegdnrnGTVQLMFAELQMLTPLVPtREVYFVRCCKQLSPEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKST 471
                  *********************************************************98.9************************************* PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqcek 206
                  ++ +++ +v+s+la+ga++wvatlq qce+
  PCP004632.1 472 IQTMYHTIVNSSLAFGARHWVATLQLQCER 501
                  ****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    
MGVDMSNNPP TSRTKDFFAS PALSLSLAGI FRDAGAAAAA SREVEEGEEG SGGGGSAAVG  60
SVRRREDTAE ISSENSGPAR SRSEDEFDGE GEHDEDDADG DNKNKKKKRK KYHRHTTEQI  120
REMEALFKES PHPDEKQRQQ LSKQLGLAPR QVKFWFQNRR TQIKAIQERH ENSLLKGEME  180
KLRDENKAMR EQINKSCCPN CGTATTSRDA TLTTEEQQLR IENARLKSEV EKLRAALVKY  240
PPGTSSPSCS AGQDQENRSS LDFYTGIFGI EKPRIMEIVN QAMEELKKMA TAGEPLWVRS  300
VETGREILNY DEYIKEFNIE VPGNARPKRS IEASRETGVV FVDLLRLVHS FMDVNQWKEM  360
FPCMISKAAT VDVINNGEGD NRNGTVQLMF AELQMLTPLV PTREVYFVRC CKQLSPEQWA  420
IVDVSIDKVE DNIDASLVKC RKRPSGCIIE DKSNGHCKVI WVEHLECQKS TIQTMYHTIV  480
NSSLAFGARH WVATLQLQCE RLVFYMATNV PMKDSTGVAT LAGRKSILKL AQRMTTSFCR  540
AIGASSYHTW TKISSKTGDD IRIASRKNLN DPGEPLGVIL CAVSSVWLPV SPHVLFDFLR  600
DETRRNEWDI MLNGGPAQTI ANLSKGQDRG NAVTIQSMKS KEKSMWILQD TCINSYESMV  660
VYAPVDITGM QSVMTGCGAS NIAILPSGFS ILPDGLESRP MVITSRQEDR SSEGGTLLTA  720
AFQVLTNSSP TAKLTMESVE SANTLISCTL RNIKTTLQCE DG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110KKKKRK
2105111KKKKRKK
3107111KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein