PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP004468.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 302aa    MW: 32042.2 Da    PI: 9.5834
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP004468.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-08106131227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  kt+lC+ +     Ck+Gd+C+FaHg+
  PCP004468.1 106 KTRLCNKYNTVEGCKFGDKCHFAHGE 131
                  8*********99************96 PP
2zf-CCCH34.34.1e-11269294127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++t+lC +f + GtC +GdrC+FaHg+
  PCP004468.1 269 FRTKLCENFTK-GTCTFGDRCHFAHGQ 294
                  589********.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MEFGGGGRKR GRPEAAHFNG NGGFKKSKPE MESFQPGIGS KSKPCTKFFS TSGCPFGEGC  60
HFLHYVPGGI KAVSQMTGSN PTHPPPPRNS AAPPSFPDGS SPPAVKTRLC NKYNTVEGCK  120
FGDKCHFAHG EWELGRPTAQ SYEDPRAGAG FPGRMGGRME SAPPAHGAVA SFGATATAKI  180
SVDASLAGAI IGKNGVHSKQ ICRVTGAKLS IREHETDHKL RNIELEGTLD QIKDASAMVR  240
ELIGNVSSGA GPHNMRNPAM SASSPASNFR TKLCENFTKG TCTFGDRCHF AHGQEELRRL  300
AM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-58C3H family protein