PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004454.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 267aa MW: 30936 Da PI: 7.3208

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004454.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76	2.9e-24	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri+nk+ rqvtf+kRr+g++KK +ELSvLCda++ + ifsstgk++ y+s PCP004454.1 9 SRIQNKTTRQVTFAKRRAGLIKKTHELSVLCDAQIGLFIFSSTGKMFRYCS 59 59***********************************************96 PP
2	K-box	60	9.5e-21	80	169	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++++e+++ el k+++e++ L+ ++ ++ GedL+ +++L +Le+qLe s++k+R++K e+l +qi +l k+ +een++L + + PCP004454.1 80 PQHNDTEYMNAELGKMRRETHHLELSLQRYTGEDLNCVRFEDLVELEHQLEASVNKVRARKFEVLQQQIANLLATTKRREEENEKLFHLI 169 578899*****************************************************************************9997655 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MGRGKITISR IQNKTTRQVT FAKRRAGLIK KTHELSVLCD AQIGLFIFSS TGKMFRYCSE 60 ASSVEELIQR YQVAKGIRIP QHNDTEYMNA ELGKMRRETH HLELSLQRYT GEDLNCVRFE 120 DLVELEHQLE ASVNKVRARK FEVLQQQIAN LLATTKRREE ENEKLFHLIK AHRAAAFGHD 180 LQAHHEAHEQ LENLEMIPKS EEHRHVLDQF PFAGEEQPSS VLQLATLQPQ PQFNPYPHEP 240 AHHHPGLLDF NLSGPSIYES QFMRRDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	6e-55	MIKC_MADS family protein