PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004399.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Nin-like

Protein Properties

Length: 907aa MW: 101471 Da PI: 6.1437

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004399.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.9	2e-28	590	641	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l+kyFs+++kdAAk++gvc T+LKriCRq+GIkRWP+Rk+k++ PCP004399.1 590 AEKDINLQVLRKYFSGSLKDAAKSIGVCSTTLKRICRQHGIKRWPSRKLKKV 641 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 907 aa Download sequence
MDDGVLSPAT MLGAQPDSAM DLDFMDELFL EGCWLEARDG PEFPNQSLPN TPLNPSFIWR 60 TLETNGNMSM NPSQNSNQEE MQTPFFKQLE EGPANPQSPC QNMIEDVVAY SGQSEDPTIG 120 RELSRRWWIG PTGNDGTASS VTQRLMTALT YIREVMRNKD VLVQVWVPVN RGGRDVLTTN 180 ELFCLDPSCS RLAKYRDISV NYQFSTGEDS TEMVKGLPGR VFSGKVPEWT PDARYFTSDE 240 YPRVGHAQQY DVSGTLALPI FEQGSRTCLG VIEVVTTDQK IRYQPDIDGI CKALEAVDLR 300 SSRNLSTENV KGCDKPYHAA LPEIQEILRS ACETHKLPLA QTWVSCIEQG KDGCRHSDDN 360 YIHCVSTVDH ACHVADPYIQ GFHEACSEHH LLRGQGIVGR AFMTNQPCFS DDMTSFFKTE 420 YPLSHHARMF NLHAAVAIRL RSTDIGSTDF VLEFFLPLEC RDPKEQKKML NSLSLIIQQT 480 CQSLRVVTDK EVEEETKFHV SEVIVPSDPG PSNVACFTEV QQNGNAVSMF PNKKQRKVLS 540 VKLSKLRQHQ EDSTLKSVEC GEEFSVLGEG EVSFSTVGAS KTREKRRAKA EKDINLQVLR 600 KYFSGSLKDA AKSIGVCSTT LKRICRQHGI KRWPSRKLKK VGHSLQKLQL VIDSVEGASG 660 AFQINSFYTN FPELTSPNLS GTSPFSNSKL SDQPNQTNLS PEGGVFSPQA TASKSPPSSC 720 SQNSSSSQCC SSKTQQHPFS CNVAGNDDPV GDNSRDGVLK RVRSEAGLHD FGQDRMELLP 780 RSQSQKILCE QQNLQSIPPS LKNNGRVTQV EVQRVKVAYA DEKTRFRMQS NWRYEDLVQE 840 IAKRFSIQDM SNFDIKYLDD DSEWVLLTCD DDLEECVDVC RSSQSHTIKL SLQISRHHLK 900 GLIGRPS

Sequence ? help Back to Top

Protein Sequence Length: 907 aa Download sequence

MDDGVLSPAT MLGAQPDSAM DLDFMDELFL EGCWLEARDG PEFPNQSLPN TPLNPSFIWR  60
TLETNGNMSM NPSQNSNQEE MQTPFFKQLE EGPANPQSPC QNMIEDVVAY SGQSEDPTIG  120
RELSRRWWIG PTGNDGTASS VTQRLMTALT YIREVMRNKD VLVQVWVPVN RGGRDVLTTN  180
ELFCLDPSCS RLAKYRDISV NYQFSTGEDS TEMVKGLPGR VFSGKVPEWT PDARYFTSDE  240
YPRVGHAQQY DVSGTLALPI FEQGSRTCLG VIEVVTTDQK IRYQPDIDGI CKALEAVDLR  300
SSRNLSTENV KGCDKPYHAA LPEIQEILRS ACETHKLPLA QTWVSCIEQG KDGCRHSDDN  360
YIHCVSTVDH ACHVADPYIQ GFHEACSEHH LLRGQGIVGR AFMTNQPCFS DDMTSFFKTE  420
YPLSHHARMF NLHAAVAIRL RSTDIGSTDF VLEFFLPLEC RDPKEQKKML NSLSLIIQQT  480
CQSLRVVTDK EVEEETKFHV SEVIVPSDPG PSNVACFTEV QQNGNAVSMF PNKKQRKVLS  540
VKLSKLRQHQ EDSTLKSVEC GEEFSVLGEG EVSFSTVGAS KTREKRRAKA EKDINLQVLR  600
KYFSGSLKDA AKSIGVCSTT LKRICRQHGI KRWPSRKLKK VGHSLQKLQL VIDSVEGASG  660
AFQINSFYTN FPELTSPNLS GTSPFSNSKL SDQPNQTNLS PEGGVFSPQA TASKSPPSSC  720
SQNSSSSQCC SSKTQQHPFS CNVAGNDDPV GDNSRDGVLK RVRSEAGLHD FGQDRMELLP  780
RSQSQKILCE QQNLQSIPPS LKNNGRVTQV EVQRVKVAYA DEKTRFRMQS NWRYEDLVQE  840
IAKRFSIQDM SNFDIKYLDD DSEWVLLTCD DDLEECVDVC RSSQSHTIKL SLQISRHHLK  900
GLIGRPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein