PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004173.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 409aa MW: 46238.4 Da PI: 7.015

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004173.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.1e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ PCP004173.1 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99**6666.***********5 PP
2	zf-CCCH	21.9	3.1e-07	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C +G+rC++ H+ PCP004173.1 34 ICTFYLK-GACAFGSRCRYEHV 54 7****.*********997 PP
3	zf-CCCH	20.4	9.3e-07	142	165	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+ fa+ G C++G++C+ +Hg PCP004173.1 142 DRAICS-FAAAGNCPRGEKCPHIHG 165 588999.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MSKRVLCKFF AHGACLKGEH CEFSHDWKAS PNNICTFYLK GACAFGSRCR YEHVKASRAQ 60 SFGSSSSTNS QPSLVIDSAS LVLPARTLAS GVSLAPLSLS ELSASSSPFL PPSKPAWNGS 120 LDGDYDDDEG SVGETRNTRP EDRAICSFAA AGNCPRGEKC PHIHGDICPS CGKHCLHPYR 180 HLEREEHMKI CEEKQKQLEA LKCSQEIECS VCLERVLSKP TVAERKFGIL SECDHPFCIS 240 CIRNWRSSSP TSGMDVNSAL RACPICRKLS YFVIPSVIWY KSKEEKQEIV DSYKARLRSI 300 DCKHFDFGNG NCPFGTSCFY KHTVKPGSYV WKFHRPPPRR PPPRRPPPRR YDIAPMDVIF 360 HMFEHLEELD DYIFEDLENE VLNSWERESL MQMGLYTSDS SEDEIDLWP

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MSKRVLCKFF AHGACLKGEH CEFSHDWKAS PNNICTFYLK GACAFGSRCR YEHVKASRAQ  60
SFGSSSSTNS QPSLVIDSAS LVLPARTLAS GVSLAPLSLS ELSASSSPFL PPSKPAWNGS  120
LDGDYDDDEG SVGETRNTRP EDRAICSFAA AGNCPRGEKC PHIHGDICPS CGKHCLHPYR  180
HLEREEHMKI CEEKQKQLEA LKCSQEIECS VCLERVLSKP TVAERKFGIL SECDHPFCIS  240
CIRNWRSSSP TSGMDVNSAL RACPICRKLS YFVIPSVIWY KSKEEKQEIV DSYKARLRSI  300
DCKHFDFGNG NCPFGTSCFY KHTVKPGSYV WKFHRPPPRR PPPRRPPPRR YDIAPMDVIF  360
HMFEHLEELD DYIFEDLENE VLNSWERESL MQMGLYTSDS SEDEIDLWP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-133	C3H family protein