PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004105.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 659aa MW: 73767.3 Da PI: 6.0169

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004105.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.2	2.6e-29	57	140	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r+em+ ++r+++ k+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++keg+ ++++++ t+++fdql+ PCP004105.1 57 RWPRQETLALLQIRSEMDVAFRDASVKGPLWEEVSSKLAALGYHRSAKKCKEKFENVYKYHRRTKEGRTGKSEGK--TYRFFDQLN 140 8******************************************************************975544..6****97 PP
2	trihelix	100.6	1.3e-31	450	534	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r++++++++++ k+plWee+s mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ l+ PCP004105.1 450 RWPKVEVQALIKLRTSLDSKYQENGPKGPLWEEISGGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHLLD 534 8******************************************************************97.99*******987 PP

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence
MIKASSIGRD AAAAAVAAPE GGGGSGDGSN NNSGEETFRG GQEELLGGGE RSFGGNRWPR 60 QETLALLQIR SEMDVAFRDA SVKGPLWEEV SSKLAALGYH RSAKKCKEKF ENVYKYHRRT 120 KEGRTGKSEG KTYRFFDQLN ALENQPPTPG NTTTHHQPKP HQSTTVAAAA TMTTMAMANP 180 PPTISHLNSS TTVPSSAAPH PTIPTVSSQG IATPTLNNLT LPSSFPPTNP IVLPPPPQPP 240 PPQPTTTNPT SNLSHHHQQQ HTAFPTSFPT IPTDLLSNSA SSSTSSDEEL EGRAKKKRKW 300 KDFFERLMKD VIQKQEDLQK RFLETIEKRE QERIVREEAW RMQEIARINR EHEILAQERS 360 IKAAKDAAVM SFLQKVSEQH QNQNQNQNQS TPNQSQQLPL QPAPLPLPLR QPAPPPQAQP 420 QQKVTTFDIV PKSNNNGEND NLMMPPSSSR WPKVEVQALI KLRTSLDSKY QENGPKGPLW 480 EEISGGMRKL GYNRNAKRCK EKWENINKYF KKVKESNKRR PEDSKTCPYF HLLDSLYRER 540 NNFDQNNVNS TSTTNSSSQF KPENSVPLMV RPEQQWPPEP PPHQQQDHQG LMMGTDHHQN 600 QGEDHHDQQD KENNIGDDDD DEEDEEEEDE EEDDDDDEGD GNYEIVANKP ASVGAATAE

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence

MIKASSIGRD AAAAAVAAPE GGGGSGDGSN NNSGEETFRG GQEELLGGGE RSFGGNRWPR  60
QETLALLQIR SEMDVAFRDA SVKGPLWEEV SSKLAALGYH RSAKKCKEKF ENVYKYHRRT  120
KEGRTGKSEG KTYRFFDQLN ALENQPPTPG NTTTHHQPKP HQSTTVAAAA TMTTMAMANP  180
PPTISHLNSS TTVPSSAAPH PTIPTVSSQG IATPTLNNLT LPSSFPPTNP IVLPPPPQPP  240
PPQPTTTNPT SNLSHHHQQQ HTAFPTSFPT IPTDLLSNSA SSSTSSDEEL EGRAKKKRKW  300
KDFFERLMKD VIQKQEDLQK RFLETIEKRE QERIVREEAW RMQEIARINR EHEILAQERS  360
IKAAKDAAVM SFLQKVSEQH QNQNQNQNQS TPNQSQQLPL QPAPLPLPLR QPAPPPQAQP  420
QQKVTTFDIV PKSNNNGEND NLMMPPSSSR WPKVEVQALI KLRTSLDSKY QENGPKGPLW  480
EEISGGMRKL GYNRNAKRCK EKWENINKYF KKVKESNKRR PEDSKTCPYF HLLDSLYRER  540
NNFDQNNVNS TSTTNSSSQF KPENSVPLMV RPEQQWPPEP PPHQQQDHQG LMMGTDHHQN  600
QGEDHHDQQD KENNIGDDDD DEEDEEEEDE EEDDDDDEGD GNYEIVANKP ASVGAATAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-98	Trihelix family protein