PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004056.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 1593aa MW: 176998 Da PI: 6.5673

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004056.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.1	4.1e-20	81	136	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k PCP004056.1 81 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 136 688999***********************************************998 PP
2	START	215.7	1.6e-67	271	492	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 ela +a++el+++a+ +ep+W++s + +n+de++++f+++ + +++ea+r+s+vv+m++ +lve+l+d++ qW++ + +a tlev+ PCP004056.1 271 ELAVAAMEELFRMAQMGEPLWMTSFdgttTVLNEDEYIRTFPRGIGpkqngFKTEASRESAVVIMNHINLVEILMDVN-QWSTVFSgivsRALTLEVL 367 57899******************999999********999****************************.*************** PP CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS START 86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176 ssg galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d +++p ++++pSg+li++++ng+skvtwveh+++++r PCP004056.1 368 SSGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHADGTWAVVDVSLDDLRPNPA---PRSCQRRPSGCLIQEMPNGYSKVTWVEHAEVDERG 462 *******************************************************4...455789************************* PP XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 177 phwllrslvksglaegaktwvatlqrqcek 206 +h+l+++lv+sg+a+gak+wvatl+rqce+ PCP004056.1 463 VHNLYKQLVSSGHAFGAKRWVATLDRQCER 492 **************************97 PP
3	START	168.1	6e-53	1396	1590	1	178
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++el+++a+ +ep+W++s + +n+de++++f+++ v +++ea+r+s+vv+m++++lve+l+d++ qW++ + +a tl PCP004056.1 1396 ELAVAAMDELIRMAQMGEPLWMTSLdgstTVLNEDEYIRTFPRE-VrpkqsgFKTEASRESAVVIMNHMKLVEILMDVN-QWSTVFSgivsRALTL 1489 57899******************999999******874.5599999***********************.************ PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171 ev+s+g galq+m+ae+q++splv+ R+++++Ry++q+ +g+w++vdvS+d+ +++p + ++++pSg+li++++ng skvtwveh+d PCP004056.1 1490 EVLSTGvagnynGALQVMTAEFQVPSPLVStRESYYLRYCKQHADGTWAVVDVSLDNLRPNPA---LKSCQRRPSGCLIQEMPNGNSKVTWVEHAD 1582 **********************************************************7...445667********************98 PP .--SSXXH CS START 172 .lkgrlph 178 +++r +h PCP004056.1 1583 eVDERGIH 1590 35555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 1593 aa Download sequence
MPSMMGSNGN ITGFASTSGL TLGQPNMMDA GNLQPLDMAP NTSESDIPRF RDDDFDSANK 60 SGSDNPEGGS GDDQENPRPK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR KELSRELGLE 120 PLQVKFWFQN KRTQMKTQHE RHENTQLRNE NEKLRADNMR YREALGNASC PNCGGPTALG 180 EMSFDEHHLR LENARLREEI DSISAIAAKY VGKPLGTYPL MSSPVPSRGQ LDLGVGSFGG 240 QPGMGGEMYG AGDLLRSISA PSEADKPMII ELAVAAMEEL FRMAQMGEPL WMTSFDGTTT 300 VLNEDEYIRT FPRGIGPKQN GFKTEASRES AVVIMNHINL VEILMDVNQW STVFSGIVSR 360 ALTLEVLSSG VAGNYNGALQ VMTAEFQVPS PLVPTRESYY VRYCKQHADG TWAVVDVSLD 420 DLRPNPAPRS CQRRPSGCLI QEMPNGYSKV TWVEHAEVDE RGVHNLYKQL VSSGHAFGAK 480 RWVATLDRQC ERLASAMASN IPTGDIGVIT NQEGRRSMLK LAERMVISFC SGVSASTTHT 540 WTTLSGTGAD DVRVMTRKSV DDPGRPPGIV LSAATSFWLP VPPKRVFEFL RDENSRSEWD 600 ILSNGGIVQE MAHIANGRDT GNCVSLLRVN SANSSQSNML ILQESCTDPT ASFVIYAPVD 660 IVAMNVVLNG SDPDYVALLP SGFAILPDGA GIGDSGSGGG SLLTVAFQIL VDSVPTAKLS 720 LGSVATVNNL IACTVERIKA ALSCDNASTS VCDLWTRLQE QFSVVSWTDK DIVILALNVQ 780 PPKFNTFRSV IRGYENVISL QEFRVQLLAE ELIVDSNVNS QFMSAMMANN SGGSKFLTSI 840 WCKFLINYVI SLATLLHFVI QNSWNDRDAK FMDKTTWRIL YKGQCSNGLY PIPSLVNHHS 900 LYSQGNSTAS ALLGQLVTSN LWHKGKFTKL PFQSSEHKSV IPFEIVHGDL WGPPYNSIDG 960 YKYYVTLIDE CTSISSQSFI ATTSPTPQLL MDSDFSLGIL QVVLPNAPLN LDHMQTRSKN 1020 GIIKNKVFLS QVAESSDVDS TLVEHATYKS AMKVLVWFKA IQEEIDALNN QHTWSLVHLP 1080 FHKNLVGCKW VFKLKKNSDG TVARHKARLV AKWFNQEPGL DYGESFSLVV KPTTDYWQGY 1140 CGVLLYIDDI IITGNSTLVI QQKVKMVNCK DSDTPYLPYN QLIKDDGTPY NNPIVYRSIV 1200 GALQYLTSTR PDIAFSVHQV YQFMHSPMVS HFQVVKRILR YLKGTLSVGI SYTQRDLTLK 1260 TFSDADWAEL LEFMHVKSAA TPVLFCDNLS AIALSFNPVQ HQRTKHIEIN VHFVHERVTK 1320 KKLFVQFVSS REQFANIFTK GFSAPLFQSH CVNLMLRSSN HEFKGHSSMA GEMYGAGDPL 1380 RSISASSEAD KPMMIELAVA AMDELIRMAQ MGEPLWMTSL DGSTTVLNED EYIRTFPREV 1440 RPKQSGFKTE ASRESAVVIM NHMKLVEILM DVNQWSTVFS GIVSRALTLE VLSTGVAGNY 1500 NGALQVMTAE FQVPSPLVST RESYYLRYCK QHADGTWAVV DVSLDNLRPN PALKSCQRRP 1560 SGCLIQEMPN GNSKVTWVEH ADEVDERGIH HLY

Sequence ? help Back to Top

Protein Sequence Length: 1593 aa Download sequence

MPSMMGSNGN ITGFASTSGL TLGQPNMMDA GNLQPLDMAP NTSESDIPRF RDDDFDSANK  60
SGSDNPEGGS GDDQENPRPK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR KELSRELGLE  120
PLQVKFWFQN KRTQMKTQHE RHENTQLRNE NEKLRADNMR YREALGNASC PNCGGPTALG  180
EMSFDEHHLR LENARLREEI DSISAIAAKY VGKPLGTYPL MSSPVPSRGQ LDLGVGSFGG  240
QPGMGGEMYG AGDLLRSISA PSEADKPMII ELAVAAMEEL FRMAQMGEPL WMTSFDGTTT  300
VLNEDEYIRT FPRGIGPKQN GFKTEASRES AVVIMNHINL VEILMDVNQW STVFSGIVSR  360
ALTLEVLSSG VAGNYNGALQ VMTAEFQVPS PLVPTRESYY VRYCKQHADG TWAVVDVSLD  420
DLRPNPAPRS CQRRPSGCLI QEMPNGYSKV TWVEHAEVDE RGVHNLYKQL VSSGHAFGAK  480
RWVATLDRQC ERLASAMASN IPTGDIGVIT NQEGRRSMLK LAERMVISFC SGVSASTTHT  540
WTTLSGTGAD DVRVMTRKSV DDPGRPPGIV LSAATSFWLP VPPKRVFEFL RDENSRSEWD  600
ILSNGGIVQE MAHIANGRDT GNCVSLLRVN SANSSQSNML ILQESCTDPT ASFVIYAPVD  660
IVAMNVVLNG SDPDYVALLP SGFAILPDGA GIGDSGSGGG SLLTVAFQIL VDSVPTAKLS  720
LGSVATVNNL IACTVERIKA ALSCDNASTS VCDLWTRLQE QFSVVSWTDK DIVILALNVQ  780
PPKFNTFRSV IRGYENVISL QEFRVQLLAE ELIVDSNVNS QFMSAMMANN SGGSKFLTSI  840
WCKFLINYVI SLATLLHFVI QNSWNDRDAK FMDKTTWRIL YKGQCSNGLY PIPSLVNHHS  900
LYSQGNSTAS ALLGQLVTSN LWHKGKFTKL PFQSSEHKSV IPFEIVHGDL WGPPYNSIDG  960
YKYYVTLIDE CTSISSQSFI ATTSPTPQLL MDSDFSLGIL QVVLPNAPLN LDHMQTRSKN  1020
GIIKNKVFLS QVAESSDVDS TLVEHATYKS AMKVLVWFKA IQEEIDALNN QHTWSLVHLP  1080
FHKNLVGCKW VFKLKKNSDG TVARHKARLV AKWFNQEPGL DYGESFSLVV KPTTDYWQGY  1140
CGVLLYIDDI IITGNSTLVI QQKVKMVNCK DSDTPYLPYN QLIKDDGTPY NNPIVYRSIV  1200
GALQYLTSTR PDIAFSVHQV YQFMHSPMVS HFQVVKRILR YLKGTLSVGI SYTQRDLTLK  1260
TFSDADWAEL LEFMHVKSAA TPVLFCDNLS AIALSFNPVQ HQRTKHIEIN VHFVHERVTK  1320
KKLFVQFVSS REQFANIFTK GFSAPLFQSH CVNLMLRSSN HEFKGHSSMA GEMYGAGDPL  1380
RSISASSEAD KPMMIELAVA AMDELIRMAQ MGEPLWMTSL DGSTTVLNED EYIRTFPREV  1440
RPKQSGFKTE ASRESAVVIM NHMKLVEILM DVNQWSTVFS GIVSRALTLE VLSTGVAGNY  1500
NGALQVMTAE FQVPSPLVST RESYYLRYCK QHADGTWAVV DVSLDNLRPN PALKSCQRRP  1560
SGCLIQEMPN GNSKVTWVEH ADEVDERGIH HLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.4	0.0	HD-ZIP family protein